View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_low_15 (Length: 416)

Name: NF17777_low_15
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_low_15
NF17777_low_15
[»] chr8 (2 HSPs)
chr8 (29-337)||(33608025-33608331)
chr8 (281-330)||(10328766-10328815)
[»] chr4 (2 HSPs)
chr4 (340-413)||(7704665-7704739)
chr4 (282-331)||(43771934-43771983)
[»] chr2 (3 HSPs)
chr2 (340-413)||(40904525-40904599)
chr2 (284-335)||(3234635-3234686)
chr2 (284-337)||(9559739-9559792)
[»] chr7 (3 HSPs)
chr7 (340-392)||(39464131-39464183)
chr7 (281-331)||(25119914-25119964)
chr7 (342-387)||(35124367-35124412)
[»] chr5 (3 HSPs)
chr5 (344-396)||(3278288-3278340)
chr5 (342-412)||(43400187-43400258)
chr5 (357-393)||(39366077-39366113)
[»] chr6 (3 HSPs)
chr6 (284-331)||(7984664-7984711)
chr6 (344-393)||(2683801-2683850)
chr6 (340-396)||(9313112-9313168)
[»] chr3 (1 HSPs)
chr3 (344-396)||(24172226-24172278)
[»] chr1 (1 HSPs)
chr1 (283-331)||(51049915-51049963)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 29 - 337
Target Start/End: Complemental strand, 33608331 - 33608025
Alignment:
Q  29 agttaactcactcatgaacattttcgtaattttgattatgagtgagcaaaacttacgagggtgaagagcaaaattcctaatcaaactgcacttagaggac 128  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||  || |||||||| |||||||||||||||||||||||||||||    
T  33608331 agttaactcactcatgaacattttcataattttgattaagagtgagcaaaacttacg--ggagaagagcagaattcctaatcaaactgcacttagaggac 33608234  T
Q  129 aaacaacattttcttttattgattcccataagattaatatgtagtctaagttagttctatgatgcaagtgagatagatgttttaacacttacaattttgt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33608233 aaacaacattttcttttattgattcccataagattaatatgtagtctaggttagttctatgatgcaagtgagatagatgttttaacacttacaattttgt 33608134  T
Q  229 tttcaccttaaatcaataaatctcctaattaaatcaagttaagttataattttgaaaaatgttaacaattgctcttaggacattgtttaagcatacaaaa 328  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||| || |  |||| ||||||||||||||||||||    
T  33608133 tttcaccttaaatcaataaatctcctaattaaatcaagtgaagctataattttaaaaaatgctaacaagtgtttctagggcattgtttaagcatacaaaa 33608034  T
Q  329 gtaataact 337  Q
    |||||||||    
T  33608033 gtaataact 33608025  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 10328815 - 10328766
Alignment:
Q  281 tgaaaaatgttaacaattgctcttaggacattgtttaagcatacaaaagt 330  Q
    ||||||||| |||||| ||| |||| |||||||||||||||| |||||||    
T  10328815 tgaaaaatgctaacaaatgcgcttatgacattgtttaagcattcaaaagt 10328766  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 7704739 - 7704665
Alignment:
Q  340 aatcatttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtttaa-aacaaggcatctac 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7704739 aatcatttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtttaacaacaaggcatctac 7704665  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 43771983 - 43771934
Alignment:
Q  282 gaaaaatgttaacaattgctcttaggacattgtttaagcatacaaaagta 331  Q
    |||||||| |||||| ||| |||| |||||||||||||||| ||||||||    
T  43771983 gaaaaatgctaacaagtgcccttatgacattgtttaagcattcaaaagta 43771934  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 40904525 - 40904599
Alignment:
Q  340 aatcatttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtttaa-aacaaggcatctac 413  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  40904525 aatcatttggtttacatgtgtgtgggttctttagaaggaaagaaatgaccgtgtatttaacaacaaggcatctac 40904599  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 3234635 - 3234686
Alignment:
Q  284 aaaatgttaacaattgctcttaggacattgtttaagcatacaaaagtaataa 335  Q
    |||||| |||||| ||| |||||| |||||||||||||| ||||||||||||    
T  3234635 aaaatgctaacaagtgcccttagggcattgtttaagcatccaaaagtaataa 3234686  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 9559792 - 9559739
Alignment:
Q  284 aaaatgttaacaattgctcttaggacattgtttaagcatacaaaagtaataact 337  Q
    ||||| ||||||| ||| ||||||||||||||||||||| ||||| || |||||    
T  9559792 aaaatattaacaagtgcccttaggacattgtttaagcattcaaaaatattaact 9559739  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 39464183 - 39464131
Alignment:
Q  340 aatcatttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtg 392  Q
    ||||||||||||||||||||| ||| |  ||||||||||||| ||||||||||    
T  39464183 aatcatttggtttacatctgtttggataatttggaaggaaaggaatgaccgtg 39464131  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 25119914 - 25119964
Alignment:
Q  281 tgaaaaatgttaacaattgctcttaggacattgtttaagcatacaaaagta 331  Q
    |||||||||||||||| ||| || | ||||||||||||||||| |||||||    
T  25119914 tgaaaaatgttaacaagtgccctaaagacattgtttaagcatataaaagta 25119964  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 35124412 - 35124367
Alignment:
Q  342 tcatttggtttacatctgtgtgggttctttggaaggaaagaaatga 387  Q
    ||||||||||||| ||||||||| || ||||||||||||| |||||    
T  35124412 tcatttggtttacctctgtgtggattatttggaaggaaaggaatga 35124367  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 3278340 - 3278288
Alignment:
Q  344 atttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtt 396  Q
    ||||||||||| ||||| || ||||||||||||||||  ||||||||||||||    
T  3278340 atttggtttacctctgtatgagttctttggaaggaaatgaatgaccgtgtgtt 3278288  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 43400258 - 43400187
Alignment:
Q  342 tcatttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtttaa-aacaaggcatcta 412  Q
    ||||||||||||| ||||||||| || ||||||||||||| ||||| || ||||| || || ||||||||||    
T  43400258 tcatttggtttacctctgtgtggattatttggaaggaaaggaatgatcgcgtgttcaacaataaggcatcta 43400187  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 39366077 - 39366113
Alignment:
Q  357 ctgtgtgggttctttggaaggaaagaaatgaccgtgt 393  Q
    |||| |||||||||||||||||||| |||||||||||    
T  39366077 ctgtttgggttctttggaaggaaaggaatgaccgtgt 39366113  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 7984711 - 7984664
Alignment:
Q  284 aaaatgttaacaattgctcttaggacattgtttaagcatacaaaagta 331  Q
    |||||| |||||| ||| ||||||||||||||||||||| ||||||||    
T  7984711 aaaatgctaacaagtgcccttaggacattgtttaagcatccaaaagta 7984664  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 2683801 - 2683850
Alignment:
Q  344 atttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgt 393  Q
    ||||||||| | ||||| ||||| |||||||||||||| |||||||||||    
T  2683801 atttggtttgcctctgtttgggtcctttggaaggaaaggaatgaccgtgt 2683850  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 9313112 - 9313168
Alignment:
Q  340 aatcatttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtt 396  Q
    ||||||||||||| | ||||| || ||||||||||||||||  ||||| ||||||||    
T  9313112 aatcatttggtttgcctctgtttgagttctttggaaggaaatgaatgatcgtgtgtt 9313168  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 24172226 - 24172278
Alignment:
Q  344 atttggtttacatctgtgtgggttctttggaaggaaagaaatgaccgtgtgtt 396  Q
    ||||||||||| || || ||| ||||||||||||||||||| || ||||||||    
T  24172226 atttggtttacctcagtttggattctttggaaggaaagaaacgaacgtgtgtt 24172278  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 51049963 - 51049915
Alignment:
Q  283 aaaaatgttaacaattgctcttaggacattgtttaagcatacaaaagta 331  Q
    ||||||| |||||| |||||| ||| ||||||||||||||| |||||||    
T  51049963 aaaaatgctaacaagtgctctaagggcattgtttaagcatataaaagta 51049915  T

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