View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_16 (Length: 402)
Name: NF17777_low_16
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 52740628 - 52740998
Alignment:
| Q |
18 |
caatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740628 |
caatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctat |
52740727 |
T |
|
| Q |
118 |
tgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740728 |
tgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttg |
52740827 |
T |
|
| Q |
218 |
gccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740828 |
gccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgt |
52740927 |
T |
|
| Q |
318 |
cttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtcc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740928 |
cttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtcc |
52740998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 383
Target Start/End: Original strand, 13539369 - 13539596
Alignment:
| Q |
156 |
gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa |
255 |
Q |
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||||||||||||||||||||| | ||||||||||| || || | | || ||| |||||| ||||| |||||||||||||| || |||||||| | |
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| T |
13539369 |
gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca |
13539468 |
T |
|
| Q |
256 |
tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt |
355 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |||||| | | ||| |||| |
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| T |
13539469 |
ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt |
13539568 |
T |
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| Q |
356 |
ctcaaccttcttgatctcaatcttcttg |
383 |
Q |
| |
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|||| |||||||||||| ||||||||| |
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| T |
13539569 |
gtcaatcttcttgatctcgatcttcttg |
13539596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 13539272 - 13539351
Alignment:
| Q |
47 |
caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt |
126 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |
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|
| T |
13539272 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt |
13539351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 25 - 381
Target Start/End: Original strand, 45394024 - 45394380
Alignment:
| Q |
25 |
cacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45394024 |
cacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatc |
45394123 |
T |
|
| Q |
125 |
ttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaa |
224 |
Q |
| |
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|| | | ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||| |
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|
| T |
45394124 |
tttgcaagtcggagaattttctgctgactttgaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaa |
45394223 |
T |
|
| Q |
225 |
caaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttcttt |
324 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45394224 |
cagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttcttt |
45394323 |
T |
|
| Q |
325 |
ttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttct |
381 |
Q |
| |
|
|||||||||| || |||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
45394324 |
ttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatcttct |
45394380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 379
Target Start/End: Complemental strand, 35782314 - 35781972
Alignment:
| Q |
37 |
aaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatcttggtaggtcag |
136 |
Q |
| |
|
||||||||| |||||||| |||||| | ||||||| |||||||| ||||||| |||| |||||||| |||||||| ||||||| |||| ||||||| |
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| T |
35782314 |
aaatcttagtcaaattttcaacatcagcaagtttctgtttttccatttccaacacctttagtgcctcctcatattgtttattgtactctttgtaggtcga |
35782215 |
T |
|
| Q |
137 |
aaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttg |
236 |
Q |
| |
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| ||||| | | | |||||| | ||||||||| ||||||| ||||||||||| || |||| || |||| |||| || ||||| ||||||| |
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| T |
35782214 |
agaatttcccgttgagtttgaaacatcaaactcaatggttccattgatgtagctattaaggatttggtcggtgtttggttcaccgaaacagtgtagtttg |
35782115 |
T |
|
| Q |
237 |
tcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtca |
336 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||| | |
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| T |
35782114 |
ccagcaggagaaaacacgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttgtcttctttttgagaaagtga |
35782015 |
T |
|
| Q |
337 |
cttgtttctgtgattctttctcaaccttcttgatctcaatctt |
379 |
Q |
| |
|
|||| || | | |||||| |||| ||| |||||||||||||| |
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|
| T |
35782014 |
cttgcttgttggtttctttttcaagctttttgatctcaatctt |
35781972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 383
Target Start/End: Original strand, 9668345 - 9668572
Alignment:
| Q |
156 |
gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa |
255 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || || | | || ||| |||||| ||||| |||||||||||||| || |||||||| | |
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| T |
9668345 |
gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca |
9668444 |
T |
|
| Q |
256 |
tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt |
355 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |||||| | | ||| |||| |
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|
| T |
9668445 |
ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt |
9668544 |
T |
|
| Q |
356 |
ctcaaccttcttgatctcaatcttcttg |
383 |
Q |
| |
|
|||| |||||||||||| ||||||||| |
|
|
| T |
9668545 |
gtcaatcttcttgatctcgatcttcttg |
9668572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 9668248 - 9668327
Alignment:
| Q |
47 |
caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt |
126 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |
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|
| T |
9668248 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt |
9668327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 47836319 - 47836263
Alignment:
| Q |
65 |
tagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgta |
121 |
Q |
| |
|
|||||||||||| || | ||| ||||||||| ||||||| |||||||||||||||| |
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|
| T |
47836319 |
tagtttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta |
47836263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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