View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_18 (Length: 375)
Name: NF17777_low_18
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 45756657 - 45756523
Alignment:
| Q |
223 |
ctataccatctaccaaccatttttacaacacggaagcctataaattgaaatcatggcttgtgaaaatataacgtgctcatttcattattaaattaaacat |
322 |
Q |
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| T |
45756657 |
ctataccatctaccaaccatttttacaacacggaagcctataaattgaaatcatggcttgtgaaaatataacgtgctcatttcattattaaattaaacat |
45756558 |
T |
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| Q |
323 |
acattaaagagagagtgttttgattagaggcaagt |
357 |
Q |
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| T |
45756557 |
acattaaagagagagtgttttgattagaggcaagt |
45756523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 45756869 - 45756810
Alignment:
| Q |
53 |
atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttgtt |
112 |
Q |
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| T |
45756869 |
atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttgtt |
45756810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 45756953 - 45756907
Alignment:
| Q |
11 |
gagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt |
57 |
Q |
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| T |
45756953 |
gagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt |
45756907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 45756782 - 45756699
Alignment:
| Q |
107 |
tttgttacactcacatttgagctctttatgttaccacacgtcca---------cagattcttcactattcataattaattcacc |
181 |
Q |
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| T |
45756782 |
tttgttatactcacatttgagctctttatgttaccacacatccacacctttatcagattctttactattcataattaattcacc |
45756699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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