View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17777_low_23 (Length: 356)
Name: NF17777_low_23
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 32168475 - 32168822
Alignment:
| Q |
1 |
ccaataaaaccgaaaaagaaatggtaaagataattggaatgtttctgaaaatagcacttcatcaaaagtttggtcaaagagaaaaatctttttacgtgga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32168475 |
ccaatgaaaccgaaaaagaaatggtaaagataattggaatgtttctgaaaatagcactttatcaaaagtttggtcaaagagcaaaatctttttacgtgga |
32168574 |
T |
|
| Q |
101 |
acaaaagaaagagaaataaacttcatataatttttataattaaagatgagtaatataaacannnnnnnnnnnnnnnnnnaggatttatcaggaaattaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32168575 |
acaaaagaaagagaaataaacttcatataatttttataattaaagatgagtaatataaacatttttttggattttttttaggatttatcaggaaattaaa |
32168674 |
T |
|
| Q |
201 |
atgatggtacatgtataaaatcgttttcatctattttttgggaaaattttatttactcggataaaattgatgtattagactctaattcctaggttgtaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32168675 |
atgatggtacatgtataaaatcgttttcatctattttttgggaaaattttatttactcggataaaattgatgtattagagtctaattcctaggttgtaag |
32168774 |
T |
|
| Q |
301 |
gaaaaaatgagggta--gggttattgttgatgaagatgatgattatga |
346 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32168775 |
gaaaaagtgagggtactgggttattgttgatgaagatgatgattatga |
32168822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University