View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_24 (Length: 352)
Name: NF17777_low_24
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 34435827 - 34435505
Alignment:
| Q |
1 |
accagacacaagctgacacataactactaataataattttgaaaaaa--gacgtaattaaaggcaaccacatatgtcggatccggattgtaaataggttg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34435827 |
accagacacaagctgacacataactactaataataattttgaaaaaatagacgtaattaaaggcaaccacatatgtcagatccggattgtaaataggttg |
34435728 |
T |
|
| Q |
99 |
tccaatcaagatcagacagtctacattacaagctaagtattttagatctnnnnnnnccaaaatcctctttaaaatctggactgttctatctttattgaca |
198 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |
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| T |
34435727 |
tccaatcaagatcagacagtctagattacaagctaagtattttagatctaa-------aaaaacc-----aaaatctggactgttctatctttattgaca |
34435640 |
T |
|
| Q |
199 |
gctgatatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttccatctgatgatg |
298 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435639 |
gctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttccatctgatgatg |
34435540 |
T |
|
| Q |
299 |
gtgatgtattaatacattttttggcactaacttat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
34435539 |
gtgatgtattaatacattttttggcactaacttat |
34435505 |
T |
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