View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_low_25 (Length: 343)

Name: NF17777_low_25
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_low_25
NF17777_low_25
[»] chr2 (5 HSPs)
chr2 (13-270)||(32004139-32004406)
chr2 (206-299)||(33648436-33648528)
chr2 (180-258)||(28197129-28197207)
chr2 (217-314)||(30217843-30217937)
chr2 (247-317)||(42261285-42261355)
[»] chr4 (9 HSPs)
chr4 (203-300)||(33990106-33990202)
chr4 (203-299)||(26699254-26699349)
chr4 (205-289)||(35662703-35662787)
chr4 (203-317)||(33090129-33090243)
chr4 (203-299)||(41964674-41964774)
chr4 (214-289)||(41961671-41961745)
chr4 (203-317)||(55085235-55085349)
chr4 (269-315)||(3786295-3786341)
chr4 (205-289)||(54881566-54881650)
[»] chr5 (5 HSPs)
chr5 (180-317)||(317001-317140)
chr5 (203-318)||(8445952-8446067)
chr5 (180-296)||(10054629-10054745)
chr5 (231-300)||(33905834-33905902)
chr5 (214-286)||(10700473-10700544)
[»] chr1 (5 HSPs)
chr1 (204-317)||(12318316-12318429)
chr1 (203-299)||(28242566-28242666)
chr1 (212-317)||(41136085-41136189)
chr1 (236-315)||(22079598-22079676)
chr1 (214-317)||(6808722-6808825)
[»] chr8 (5 HSPs)
chr8 (204-299)||(3772453-3772552)
chr8 (203-244)||(10240385-10240426)
chr8 (203-246)||(7624810-7624854)
chr8 (270-314)||(15691119-15691163)
chr8 (233-289)||(40222018-40222073)
[»] chr3 (5 HSPs)
chr3 (206-280)||(5433774-5433847)
chr3 (203-317)||(20937918-20938032)
chr3 (205-289)||(41819342-41819427)
chr3 (217-315)||(1683750-1683847)
chr3 (205-289)||(46860737-46860825)
[»] chr7 (3 HSPs)
chr7 (266-319)||(1359974-1360027)
chr7 (203-299)||(2390546-2390646)
chr7 (203-299)||(29608998-29609091)
[»] chr6 (3 HSPs)
chr6 (270-315)||(4386859-4386904)
chr6 (203-289)||(26800848-26800938)
chr6 (205-317)||(25073826-25073937)
[»] scaffold0236 (1 HSPs)
scaffold0236 (204-289)||(10751-10840)
[»] scaffold0002 (1 HSPs)
scaffold0002 (247-317)||(490120-490190)
[»] scaffold0197 (1 HSPs)
scaffold0197 (179-244)||(1262-1327)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 32004139 - 32004406
Alignment:
Q  13 tgaaaccatgacatgactttacaaccgtgatacaattttttaggcagaatttggatgaag----------ttaaatcgtgacacgattttggaataaacg 102  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||          ||||||||||||| ||||||||||||||||    
T  32004139 tgaaaccatgacatgattttacaatcgtgatacaattttttaggcagaatttggaggaagttaatggaagttaaatcgtgacatgattttggaataaacg 32004238  T
Q  103 taaaatattgaaaattgtggcacagtttaatcgtggcacgattcaggcaaatcgtgacacagttttgtggtttataactttacactttgttggtagatat 202  Q
    |  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||  ||||||    
T  32004239 tgcaatattggaaattgtggcacagtttaatcgtggcacgatttaggcaaatcgtgacacagttttgtggtttataattttacacttggttgccagatat 32004338  T
Q  203 gatctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaa 270  Q
    ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  32004339 gatttagattgttgttattgcttgtggctattttggttattagtttgccattgatacatgtttcacaa 32004406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 33648436 - 33648528
Alignment:
Q  206 ctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttgga 299  Q
    ||||||||||||||||||| || | |||||| |||||||| ||| ||||||| | |  | ||| |||||||||||||||||| | |||||||||    
T  33648436 ctagattgttgttgttgctcgtagttatttttgttattgg-ttgtcattgattcttactccacgaatctaaatttcattgatatgagatttgga 33648528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 28197129 - 28197207
Alignment:
Q  180 ctttacactttgttggtagatatgatctagat-tgttgttgttgcttgtggctattttggttattggtttgccattgata 258  Q
    |||||||||| |||| ||||||  |||||||| ||  ||||||||||||| |||||||| ||||||| ||||||||||||    
T  28197129 ctttacacttggttgctagataaaatctagatatgccgttgttgcttgtgactattttgattattgg-ttgccattgata 28197207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 30217937 - 30217843
Alignment:
Q  217 ttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctaccaaattcaca 314  Q
    ||||||||||||| | ||||||||||||||| | | ||||||  | || |||||||||||||| ||||||||| ||||||| |  |||| ||||||||    
T  30217937 ttgttgcttgtggttgttttggttattggtt-gtcgttgata--ttttccacaaatctaaattccattgatgtgagatttgaaattaccgaattcaca 30217843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 42261355 - 42261285
Alignment:
Q  247 ttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctaccaaattcacaaca 317  Q
    ||||||||||||| || | ||||||||||||||||||||| || ||||| | || |||| |||||| ||||    
T  42261355 ttgccattgatacttgctccacaaatctaaatttcattgacgtgagattagaagttaccgaattcagaaca 42261285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 33990106 - 33990202
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggag 300  Q
    ||||||||||||||||||||||||||  ||||||||||||| | ||||||||||||| |||  |||||||||| ||||||||| ||| ||||||||||    
T  33990106 gatctagattgttgttgttgcttgtgtttattttggttatt-gattgccattgatacttgtcccacaaatctagatttcattggtgtgagatttggag 33990202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 26699349 - 26699254
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttgga 299  Q
    ||||||||||||||| ||  ||||||| || |||||||||||||| |||||||||||||||  ||| |||||||||||||||||||| || ||||||    
T  26699349 gatctagattgttgtcgtgtcttgtggttaatttggttattggtt-gccattgatacctgtcccacgaatctaaatttcattgatgtgaggtttgga 26699254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 35662703 - 35662787
Alignment:
Q  205 tctagattgttgttgttgcttgtggcta-ttttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||| |||||||||||||||| ||| || |||||||| |||||| ||||||||||| || | ||||||||||||||||||||||||    
T  35662703 tctatattgttgttgttgcttatggttaattttggttgttggtt-gccattgatacttgctccacaaatctaaatttcattgatgt 35662787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 33090129 - 33090243
Alignment:
Q  203 gatctagat-tgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagc 301  Q
    ||||||||| |||||||||||||  ||| ||||| |||||||| || | ||||||||| |    |||||||| ||||||||||||||| ||||||||||     
T  33090129 gatctagatatgttgttgttgctcttggttatttcggttattgatt-gtcattgatacttcccccacaaatcaaaatttcattgatgtgagatttggagt 33090227  T
Q  302 taccaaattcacaaca 317  Q
    |||| |||||||||||    
T  33090228 taccgaattcacaaca 33090243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 41964674 - 41964774
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattt-----tggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttg 297  Q
    |||||||||||||||| |||||||||| |||||     || || |||||| ||||||||||| || | ||| |||||||||||||||||||| || ||||    
T  41964674 gatctagattgttgttattgcttgtggttatttacatttgattgttggtt-gccattgatacttgctccacgaatctaaatttcattgatgtgaggtttg 41964772  T
Q  298 ga 299  Q
    ||    
T  41964773 ga 41964774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 41961671 - 41961745
Alignment:
Q  214 ttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||||||||||||| | | ||||||||||||| ||| ||||||||| ||   |||| |||||||||||||||||||    
T  41961671 ttgttgttgcttgtagtttttttggttattgg-ttgtcattgatacttgccccacagatctaaatttcattgatgt 41961745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 55085349 - 55085235
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagct 302  Q
    |||||||||||||||| |||||||| | || |||| || |||| ||| ||||||||| || | ||  |||||||||||||||||||| |  ||||||  |    
T  55085349 gatctagattgttgttattgcttgtagttaatttgattgttgg-ttgtcattgatacttgctccatgaatctaaatttcattgatgtgaagtttggaatt 55085251  T
Q  303 -accaaattcacaaca 317  Q
     |||||||||||||||    
T  55085250 gaccaaattcacaaca 55085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 3786295 - 3786341
Alignment:
Q  269 aaatctaaatttcattgatgtaagatttggagctaccaaattcacaa 315  Q
    ||||||||||||||||||||| |||| ||||| |||| |||||||||    
T  3786295 aaatctaaatttcattgatgtgagatatggagttaccgaattcacaa 3786341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 54881566 - 54881650
Alignment:
Q  205 tctagattgttgttgttgcttgtggct-attttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||| ||||||||| |||||||||| | ||||||||| |||||| | ||||||||| || | ||| ||| ||||||||||||||||    
T  54881566 tctatattgttgttattgcttgtggtttattttggttgttggtt-gtcattgatacttgctccacgaatataaatttcattgatgt 54881650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 317001 - 317140
Alignment:
Q  180 ctttacactttgttggtagatatgatctagatt----gttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatcta 275  Q
    |||||||||| |||| |||||| |||||||||     ||||||||||||||||| ||||||||||||||| ||| || |||||| |||  ||| ||||||    
T  317001 ctttacacttggttgctagataagatctagatctgtcgttgttgttgcttgtggttattttggttattgg-ttgtcactgatacttgtcccacgaatcta 317099  T
Q  276 aatttcattgatgtaagatttggagctaccaaattcacaaca 317  Q
    |||||||||||||| |||||||||| | || |||||||||||    
T  317100 aatttcattgatgtgagatttggagtttcc-aattcacaaca 317140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 318
Target Start/End: Original strand, 8445952 - 8446067
Alignment:
Q  203 gatctagat-tgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagc 301  Q
    ||||||||| |||||||||||||||||| ||| ||| ||||  ||| ||||||||||| |||  ||||||||||||||||||||||||  |||||| ||     
T  8445952 gatctagatctgttgttgttgcttgtggttatcttgattatcagtt-gccattgatacttgtcccacaaatctaaatttcattgatgtgggatttgtagt 8446050  T
Q  302 taccaaattcacaacag 318  Q
    |||| |||| |||||||    
T  8446051 taccgaatttacaacag 8446067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 10054745 - 10054629
Alignment:
Q  180 ctttacactttgttggtagatatgatctagatt-gttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaat 278  Q
    |||||||||| |||| |||||  |||||||||| |||| |||||| ||||| ||||||| ||||| ||| | ||||||||| |||   ||||||||||||    
T  10054745 ctttacacttggttgctagattagatctagatttgttgatgttgcatgtggttattttgattattagtt-gtcattgatacttgtcctacaaatctaaat 10054647  T
Q  279 ttcattgatgtaagattt 296  Q
    ||||||||| | ||||||    
T  10054646 ttcattgatatgagattt 10054629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 33905902 - 33905834
Alignment:
Q  231 tattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggag 300  Q
    |||||| |||||||||| | ||||||||| |||||||||||||||||||| |||| ||| ||||||||||    
T  33905902 tattttagttattggtt-gtcattgatacttgtttcacaaatctaaatttaattggtgtgagatttggag 33905834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 10700544 - 10700473
Alignment:
Q  214 ttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattga 286  Q
    ||||| |||||||  | ||||||||||||||||| | |||||||||| |  ||||| ||||||||||||||||    
T  10700544 ttgttattgcttgcagttattttggttattggtt-gtcattgatacccgcctcacacatctaaatttcattga 10700473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 12318429 - 12318316
Alignment:
Q  204 atctagat-tgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagct 302  Q
    |||||||| |||||||||||| ||||  ||||||||||||||||| ||||||||||| ||   ||   ||| ||||||||||||||| ||||||||||||    
T  12318429 atctagatctgttgttgttgcgtgtgcttattttggttattggtt-gccattgatacttgccccatgcatccaaatttcattgatgtgagatttggagct 12318331  T
Q  303 accaaattcacaaca 317  Q
    ||| |||||||||||    
T  12318330 accgaattcacaaca 12318316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 28242566 - 28242666
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctat-----tttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttg 297  Q
    |||||||||||||||||||||||| || |||     |||||||||||| ||| ||||||||| || | ||| |||||||||||||||||||| || ||||    
T  28242566 gatctagattgttgttgttgcttgaggttatttacatttggttattgg-ttgtcattgatacttgctccacgaatctaaatttcattgatgtgaggtttg 28242664  T
Q  298 ga 299  Q
    ||    
T  28242665 ga 28242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 41136085 - 41136189
Alignment:
Q  212 tgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctaccaaattc 311  Q
    |||||||||| ||||||| ||||||||||||||||| | || | |||| |    ||| |||||||||||||||||||| |||||||||| |||| ||||     
T  41136085 tgttgttgttacttgtggttattttggttattggtt-gtcaataatactttccccacgaatctaaatttcattgatgtgagatttggagttaccgaattt 41136183  T
Q  312 acaaca 317  Q
    ||||||    
T  41136184 acaaca 41136189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 22079598 - 22079676
Alignment:
Q  236 tggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctaccaaattcacaa 315  Q
    ||||||||| |||| ||||||||| |||  |||||||||||||||||||||| | |||||||||| | || |||||||||    
T  22079598 tggttattg-tttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 22079676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 6808722 - 6808825
Alignment:
Q  214 ttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagcta-ccaaattca 312  Q
    |||||||| ||||| | ||||||||||||||| | ||||||||||| | |  || |||| |||||||||||||||| |||||| ||| || || ||||||    
T  6808722 ttgttgttacttgtagttattttggttattggct-gccattgatacttatcccataaatttaaatttcattgatgtgagattttgagttacccgaattca 6808820  T
Q  313 caaca 317  Q
    |||||    
T  6808821 caaca 6808825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 3772453 - 3772552
Alignment:
Q  204 atctagattgttgttgttgcttgtggcta-----ttttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttgg 298  Q
    |||||||||||||||||||||||||| ||     ||||||| ||||| |||||||||||||||| | ||| |||||||||||||||||||| || |||||    
T  3772453 atctagattgttgttgttgcttgtggttattttcttttggtgattgg-ttgccattgatacctgctccacgaatctaaatttcattgatgtgaggtttgg 3772551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 10240385 - 10240426
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattttggttattg 244  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  10240385 gatctagattgttgttattgtttgtggctattttagttattg 10240426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 7624854 - 7624810
Alignment:
Q  203 gatctagatt-gttgttgttgcttgtggctattttggttattggt 246  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||    
T  7624854 gatctagattcgttgttgttgtttgcggctattttggttattggt 7624810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 15691119 - 15691163
Alignment:
Q  270 aatctaaatttcattgatgtaagatttggagctaccaaattcaca 314  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  15691119 aatctaaatttcattgatgtgaggtttggagttaccgaattcaca 15691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 40222018 - 40222073
Alignment:
Q  233 ttttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||||||| |||||| ||||||||||| |  | ||||||||||||||||||||||||    
T  40222018 ttttggttgttggtt-gccattgatactttctccacaaatctaaatttcattgatgt 40222073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 5433847 - 5433774
Alignment:
Q  206 ctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaattt 280  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| || | ||| |||||||||||    
T  5433847 ctagattgttgttgttgcttgtggttattttggttattgg-ttgtcattgatacttgctccacgaatctaaattt 5433774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 20937918 - 20938032
Alignment:
Q  203 gatctagatt-gttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagc 301  Q
    |||||||||| ||||||| ||||||| | ||||||| ||||| ||| | ||||||||| |||  ||||||||||||||| | |||||| ||||||||||     
T  20937918 gatctagatttgttgttgctgcttgtagttattttgcttattagtt-gtcattgatacttgtcccacaaatctaaattttactgatgtgagatttggagt 20938016  T
Q  302 taccaaattcacaaca 317  Q
      || |||||||||||    
T  20938017 gtccgaattcacaaca 20938032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 41819427 - 41819342
Alignment:
Q  205 tctagattgttgttgttgcttgtggcta--ttttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||| |||||||||||||||||||  |   |||||||| |||||| ||||||||||| || | ||| ||||||||||||||||||||    
T  41819427 tctatattgttgttgttgcttgtgatttacttttggttgttggtt-gccattgatacttgctccacgaatctaaatttcattgatgt 41819342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 1683750 - 1683847
Alignment:
Q  217 ttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctaccaaattcacaa 315  Q
    |||||| |||| | ||| ||||||||||||| | |||||||   |||  |||| ||||||||||||||||||| |||||| ||| |||| |||||||||    
T  1683750 ttgttggttgtagttatgttggttattggtt-gtcattgatgtttgtcccacacatctaaatttcattgatgtgagatttagagttaccgaattcacaa 1683847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 46860737 - 46860825
Alignment:
Q  205 tctagattgttgttgttgcttgtggctattt-----tggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||| ||||||||||||| |||||| |||||     |||||||||||| ||||||||||  || | ||| ||||||||||||||||||||    
T  46860737 tctatattgttgttgttgtttgtggttatttacatttggttattggtt-gccattgatatttgctccacgaatctaaatttcattgatgt 46860825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 1360027 - 1359974
Alignment:
Q  266 cacaaatctaaatttcattgatgtaagatttggagctaccaaattcacaacaga 319  Q
    |||||||||||||||||||| ||||||||||| || |||| |||||||||||||    
T  1360027 cacaaatctaaatttcattggtgtaagatttgaagttaccgaattcacaacaga 1359974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 2390546 - 2390646
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattt-----tggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttg 297  Q
    |||||||||||||||| ||| |||||| |||||     |||||||||||| | ||||||||| || | ||| |||||||||||||||||||| || ||||    
T  2390546 gatctagattgttgttattgattgtggttatttacatttggttattggtt-gtcattgatacttgctccactaatctaaatttcattgatgtgaggtttg 2390644  T
Q  298 ga 299  Q
    ||    
T  2390645 ga 2390646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 29608998 - 29609091
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttgga 299  Q
    ||||||||||||||||||||||||||| |||||     ||| | ||| ||||||||| || | ||| ||||||||||||||| |||| || ||||||    
T  29608998 gatctagattgttgttgttgcttgtggttattt---acatttggttgtcattgatacttgctccacgaatctaaatttcattaatgtgaggtttgga 29609091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 4386859 - 4386904
Alignment:
Q  270 aatctaaatttcattgatgtaagatttggagctaccaaattcacaa 315  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  4386859 aatctaaatttcattgatgtgagatttggagttaccaaattcacaa 4386904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 26800848 - 26800938
Alignment:
Q  203 gatctagattgttgttgttgcttgtggctattt-----tggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||||||||||||||| ||||||||||  ||||     |||||||||||| ||||||||||| || | ||| ||||||||||||||||||||    
T  26800848 gatctagattgttgttattgcttgtggtaatttacatttggttattggtt-gccattgatacttgctccacgaatctaaatttcattgatgt 26800938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 25073826 - 25073937
Alignment:
Q  205 tctagattgttgttgttgcttgtggctattttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctac 304  Q
    ||||||||||||||||||||||||| |||||| |||||| | ||  ||||||||| |||  ||| |||||||| || ||| |||  |||||||||  | |    
T  25073826 tctagattgttgttgttgcttgtggttatttttgttatt-gattatcattgatacttgtcccacgaatctaaactttattaatgcgagatttggaattgc 25073924  T
Q  305 caaattcacaaca 317  Q
    | |||||||||||    
T  25073925 cgaattcacaaca 25073937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 10751 - 10840
Alignment:
Q  204 atctagattgttgttgttgcttgtggcta-----ttttggttattggtttgccattgatacctgtttcacaaatctaaatttcattgatgt 289  Q
    |||||||||||||||||||||||||| ||     |||||||||| || ||| ||||||||| |  | ||||||||||||||||||||||||    
T  10751 atctagattgttgttgttgcttgtggttattttcttttggttatcgg-ttgtcattgatactttctccacaaatctaaatttcattgatgt 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 490190 - 490120
Alignment:
Q  247 ttgccattgatacctgtttcacaaatctaaatttcattgatgtaagatttggagctaccaaattcacaaca 317  Q
    ||||||||||||| || | ||||||||||||||||||||| || ||||| | || |||| |||||| ||||    
T  490190 ttgccattgatacttgctccacaaatctaaatttcattgacgtgagattagaagttaccgaattcagaaca 490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 1327 - 1262
Alignment:
Q  179 actttacactttgttggtagatatgatctagattgttgttgttgcttgtggctattttggttattg 244  Q
    ||||||||||| |||  |||||  ||||||||||||| ||||| ||| ||| ||||||||||||||    
T  1327 actttacacttggtttctagattagatctagattgttattgttacttttggatattttggttattg 1262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University