View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_26 (Length: 339)
Name: NF17777_low_26
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 10125461 - 10125775
Alignment:
| Q |
17 |
caagccttccctaaaatatcagttgcttcttcttgaaagttagttattcagaacaatgtatgattatattgtccacatatgatttaggtgcttttcagtt |
116 |
Q |
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| T |
10125461 |
caagccttccctaaaatatcagttgcttcttcttgaaagttagttattcagaaaaatgtatgattatattgtccacatatgatttaggtgcttttcagtt |
10125560 |
T |
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| Q |
117 |
gctccaacttcaagaagaactcagcaagcaatttaaaacaagtggtagttgccctgaaaatgttgactcccatattcgtcttaataaagacactttgttg |
216 |
Q |
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| T |
10125561 |
gctccaacttcaagaagaactcagcaagcaatttaaaacaagtggtagttgccctgaaaatgttgactcccatattcgtcttaataaagacactttgttg |
10125660 |
T |
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| Q |
217 |
aattctttgtggaagttgaatgtagtggacatagaagtaacccttgcacacgtgtgtcaaatggtaagttcttaatgcgttttaattacatataacaaaa |
316 |
Q |
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| T |
10125661 |
aattctttgtggaagttgaatgtagtggacatagaagtaacccttgcacacgtgtgtcaaatggtaagttcttaatgcgttttaattacatataacaaaa |
10125760 |
T |
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| Q |
317 |
cactttattcttttc |
331 |
Q |
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| T |
10125761 |
cactttattcttttc |
10125775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 35 - 294
Target Start/End: Original strand, 10118881 - 10119143
Alignment:
| Q |
35 |
tcagttgcttcttcttgaaagttagttattcagaacaatgtatgattatattgtccacatatgatttaggtgcttttcagttgctccaacttcaagaaga |
134 |
Q |
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| T |
10118881 |
tcagtttcttcttattggaagttagttagtcagaacaatgtttgattataatgtgcacatatgatttaggtgcttatcagttgttccaacttcaaaaaga |
10118980 |
T |
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| Q |
135 |
actcagcaagcaatttaaaacaagtggtagttgccctgaaaatgttgactcccatattcgtcttaataa--agacactt-tgttgaattctttgtggaag |
231 |
Q |
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| T |
10118981 |
actccgcaagcaatctgaaacgggtggtagttgccccgaaaatgttgactcacatattcgtcctgatcaggagacatttatattgaattctttgtggaag |
10119080 |
T |
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| Q |
232 |
ttgaatgtagtggacatagaagtaacccttgcacacgtgtgtcaaatggtaagttcttaatgc |
294 |
Q |
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| T |
10119081 |
ataaatgtagcagacatagaagtaacccttgcacacgtgtgtcaaatggtgagttcttaatgc |
10119143 |
T |
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