View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_27 (Length: 324)
Name: NF17777_low_27
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 16587486 - 16587189
Alignment:
| Q |
1 |
aatttgagaagtgaattaggagtgtgtagatgtgtttatacactaaaattcgactccctcatatgtttaatttctttgagatgatttcacttaaatggtt |
100 |
Q |
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| T |
16587486 |
aatttgagaaatgaattaggagtgtgtagatgtgtttatacactaaaatccgactccttcgcatgtttgatttctttgagatgatttcacttaaatggtt |
16587387 |
T |
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| Q |
101 |
gctcaatagacactttaaagttgtttactttgctgaaaatagtcgatcaaagttatgacccgtccaaccatattttacacacaaaaataactaatcagag |
200 |
Q |
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| T |
16587386 |
gctcaataaacactttaaagttgtttactttgctgaaaatagtcgatcaaagttatgacccgtccaaccatattttacacacaaaaacaactaataaaag |
16587287 |
T |
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| Q |
201 |
gttacaactaggttacgactgatcaacgagattgaggtaaacgaccttctttcactaatgcattcactagagctggtttctatggaacattgatgagt |
298 |
Q |
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| T |
16587286 |
gttacaactaggttacgacggatcaacgagattgaggtaaacaactttctttcactaatgcattcactagagctggtttctatgaaacattgatgagt |
16587189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 16587822 - 16587885
Alignment:
| Q |
227 |
cgagattgaggtaaacgaccttctttcactaatgcattcactagagctggtttctatggaacatt |
291 |
Q |
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| T |
16587822 |
cgagattgaggtaaacaactttctttcacttatccatccactagagctggtttcta-ggaacatt |
16587885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 16587652 - 16587746
Alignment:
| Q |
43 |
ctaaaattcgactccctcatatgtttaatttctttgagatgatttcacttaaatggttgctcaatagacactttaaagttgtttactttgctgaaaa |
139 |
Q |
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| T |
16587652 |
ctaaaatctgactcccttatatgttcgatttcttttagataatttc--ttagatggttgctcaataggcaccttaaagttattcacttggctgaaaa |
16587746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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