View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_3 (Length: 620)
Name: NF17777_low_3
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 43 - 610
Target Start/End: Complemental strand, 46047217 - 46046650
Alignment:
| Q |
43 |
gcatgcattttaacaatatcagaacgaatgcaattaattaattctgatttttgtgcatatatctctaaatagtgggtgaagatataaaagatagtgctga |
142 |
Q |
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| T |
46047217 |
gcatgcattttaacaatatcagaacgaatgcaattaattaattctgatttttgtgcatatatctctaaatagtgggtgaagatataaaagatagtgctga |
46047118 |
T |
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| Q |
143 |
atatgtcatcacacacatgcatcttgagcacatatatacatatccatctagaaacttgctgagattttgatgcatttgaccttcaaccattgaaaccctt |
242 |
Q |
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| T |
46047117 |
atatgtcatcacacacatgcatcttgagcacatatatacatatccatctagaaacttgctgagattttgatgcatttgaccttcaaccattgaaaccctt |
46047018 |
T |
|
| Q |
243 |
tcttcaaagaacgtttcagcttaccttcggtcccataaaacttgtatctggccactctcctctttctttttctctcagggtcattccaccatgacatact |
342 |
Q |
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| T |
46047017 |
tcttcaaagaacgtttcagcttaccttcggtcccataaaacttgtatctggccactctcctctttctttttctctcagggtcattccaccatgacatgct |
46046918 |
T |
|
| Q |
343 |
cttcttctttttcaccacagaacgtttttgcagcgtcttataatttttcaccacagaacgttctcgcgatgtctcataataattataattagagtacaga |
442 |
Q |
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| T |
46046917 |
cttcttctttttcaccacagaacgttctcgcagcgtctcataatttttcaccacagaacgttctcgcgatgtctcataataattataattagagtacaga |
46046818 |
T |
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| Q |
443 |
gatggagagttcatgctcctcccaacccacaatttggtgttgccgatgcttctcacatttgcatcatgtaggttggtaccagctgaccgacctagctggt |
542 |
Q |
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| T |
46046817 |
gatggagagttaacgctcctcccaacccacaatttggtgttgccgatgcttctcacatttgcatcatgtaggttggtaccagctgaccgacctagctggt |
46046718 |
T |
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| Q |
543 |
attggagcacctccatctctgaaccctatatctttgttgatatatctatgtttttcgtttctcctatg |
610 |
Q |
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| T |
46046717 |
attggagcacctccatctctgaaccctatatctttgttgatatatctatgtttttcgtttctcctatg |
46046650 |
T |
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