View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_31 (Length: 289)
Name: NF17777_low_31
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_31 |
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| [»] chr5 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38752385 - 38752673
Alignment:
| Q |
1 |
ttactcattcactaatgcaccaccgagtttaaaataacctctatcactctctttctattagagcaacacctcttattcacaaagaatacactaggtttga |
100 |
Q |
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| T |
38752385 |
ttactcattcactaatgcaccaccaagtttaaaataacctctctcactctctttctattagagcaacacctcttattcacaatgaatacactaggtttga |
38752484 |
T |
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| Q |
101 |
ttagagagttcagccaattgtgcctacgtatccgactataaagtggttgtaatatttttccattaatcaaatttaggattgcatatatattacaaatttt |
200 |
Q |
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| T |
38752485 |
ttagagagttcggccaattgtgcctacgtatccgactacaaagtggttgtaatatttttccattagtcaaatttcggattgcatatatattacaaatttt |
38752584 |
T |
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| Q |
201 |
gtttaaatactacggtccaatttacatgattatatctgatcagtagacaacttatgtttaaatactacagtccaatttataagattatc |
289 |
Q |
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| T |
38752585 |
atttaaatactacggtccaatttacatgattatatctgatcagtagacaacttgtgtttaaatactacagtccaatttacaagattatc |
38752673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 38752639 - 38752681
Alignment:
| Q |
200 |
tgtttaaatactacggtccaatttacatgattatatctgatca |
242 |
Q |
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| T |
38752639 |
tgtttaaatactacagtccaatttacaagattatctctgatca |
38752681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 10842645 - 10842682
Alignment:
| Q |
187 |
atattacaaattttgtttaaatactacggtccaattta |
224 |
Q |
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| T |
10842645 |
atattacaatttgtgtttaaatactacggtccaattta |
10842682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 38779482 - 38779442
Alignment:
| Q |
247 |
acaacttatgtttaaatactacagtccaatttataagatta |
287 |
Q |
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| T |
38779482 |
acaacttgtgtttaaatactacagtccagtttacaagatta |
38779442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 34655354 - 34655396
Alignment:
| Q |
190 |
ttacaaattttgtttaaatactacggtccaatttacatgatta |
232 |
Q |
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| T |
34655354 |
ttacaaatttactttaaatgctacggtccaatttacatgatta |
34655396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 37410026 - 37410071
Alignment:
| Q |
187 |
atattacaaattttgtttaaatactacggtccaatttacatgatta |
232 |
Q |
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| T |
37410026 |
atattacaatttgtttttaaatactacggtccaatttacaagatta |
37410071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 4999915 - 4999955
Alignment:
| Q |
247 |
acaacttatgtttaaatactacagtccaatttataagatta |
287 |
Q |
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| T |
4999915 |
acaacttatatttaaatactacggtccaatttacaagatta |
4999955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 37855033 - 37855001
Alignment:
| Q |
257 |
tttaaatactacagtccaatttataagattatc |
289 |
Q |
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| T |
37855033 |
tttaaatactacggtccaatttataagattatc |
37855001 |
T |
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