View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_low_33 (Length: 287)

Name: NF17777_low_33
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_low_33
NF17777_low_33
[»] chr7 (6 HSPs)
chr7 (23-287)||(21130197-21130461)
chr7 (23-287)||(21111237-21111501)
chr7 (30-287)||(18658366-18658623)
chr7 (78-287)||(21123124-21123333)
chr7 (47-287)||(21108364-21108601)
chr7 (47-287)||(21098745-21098982)
[»] chr4 (1 HSPs)
chr4 (23-287)||(39132275-39132539)
[»] chr3 (9 HSPs)
chr3 (47-287)||(26675261-26675498)
chr3 (45-177)||(26713623-26713755)
chr3 (45-177)||(26736859-26736991)
chr3 (52-243)||(26731938-26732126)
chr3 (80-243)||(26690627-26690787)
chr3 (45-169)||(26750795-26750919)
chr3 (45-108)||(26743870-26743933)
chr3 (52-177)||(26694851-26694976)
chr3 (57-164)||(47212046-47212153)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 21130197 - 21130461
Alignment:
Q  23 tcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggta 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||| ||||    
T  21130197 tcaactccttctatattcatcattgttggactctttccggttatcatctctaacacgacaaccccgtaactataaacatccactttagatgttattggta 21130296  T
Q  123 aattgaaaatccattcaggtgccatatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaa 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21130297 aattgaaaatccactcaggtgccatatatcctcgtgttcctctaatcattgagaatcctgaactattatcgagattgtttcgattttgtagcttagacaa 21130396  T
Q  223 tccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21130397 tccaaaatcggctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcac 21130461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 21111237 - 21111501
Alignment:
Q  23 tcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggta 122  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||     
T  21111237 tcaactccttccatattcatcattgttggactctttccggttatcatatccaacaaaacaaccccataactataaacatccactttagatgttattggtg 21111336  T
Q  123 aattgaaaatccattcaggtgccatatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaa 222  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| |||||||||||   |||  |||||||||||    
T  21111337 aattggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaa 21111436  T
Q  223 tccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111437 tccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcac 21111501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 18658366 - 18658623
Alignment:
Q  30 cttctatattcatcattgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaa 129  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  18658366 cttctatattcatcatcgttggactctttccagttatcatctccaacaatacaaccccataaccataaacatccactttagatgttattggcaaattgaa 18658465  T
Q  130 aatccattcaggtgccatatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaa 229  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| |||| |||||||  |||  |||||||| |||||||||    
T  18658466 aatccactcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagactgtttcgggttttcagcttagataatccaaaa 18658565  T
Q  230 tctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
    ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  18658566 tctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctttatatcac 18658623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 78 - 287
Target Start/End: Original strand, 21123124 - 21123333
Alignment:
Q  78 atacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgccatatatcctcgtgttcctctaatcattgagaa 177  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  21123124 atacaaccccataactataaacatccactttagatgttattggtaaattggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaa 21123223  T
Q  178 tcctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggc 277  Q
    | ||||| |||||| |||||||||||   |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21123224 ttctgaattattattaagattgtttctgcttttcagcttagacaatccaaaatctgctaacttgggttgaaagttagaatcaagaagtatattttgaggc 21123323  T
Q  278 tttatatcac 287  Q
    ||||||||||    
T  21123324 tttatatcac 21123333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 21108601 - 21108364
Alignment:
Q  47 gttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgcca 146  Q
    |||||||| ||||| |||||||| ||||| |  || |  |||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  21108601 gttggactttttcctgttatcatttccaaaacaactattccataactataaacatccaccttagatgttattggcaaattgaaaatccattcaggtgcca 21108502  T
Q  147 tatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaatctgctaacttgggctg 246  Q
    |||| |||| ||||||||||||||||||||  | |||   ||||| ||| ||||| |  ||||| ||||| |||||||||||||| ||||||||||||||    
T  21108501 tataccctcttgttcctctaatcattgagatgcatga---attattaaggttgttcctgttttgcagctttgacaatccaaaatcggctaacttgggctg 21108405  T
Q  247 aaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
     |||||||||||||||||||| ||||| |||||||||||||    
T  21108404 gaagttagaatcaagaagtatgttttgtggctttatatcac 21108364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 21098982 - 21098745
Alignment:
Q  47 gttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgcca 146  Q
    |||||||| ||||| |||||||| ||||| |  || |  ||||| ||||||||||| |||||||||||||| || ||||||||||||||||| || ||||    
T  21098982 gttggactttttcctgttatcatttccaatacaactattccatagctataaacatctactttagatgttattggcaaattgaaaatccattctggggcca 21098883  T
Q  147 tatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaatctgctaacttgggctg 246  Q
    |||| |||| ||||||||||||||| || |  | |||| | ||    ||||||||||  ||||| |||||||||||||||||||| ||||||||||| |     
T  21098882 tataccctcttgttcctctaatcatagatacacttgaattgttg---agattgtttctgttttgcagcttagacaatccaaaatccgctaacttgggttc 21098786  T
Q  247 aaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
     |||||||||||||||||||||||||| |||||||||||||    
T  21098785 gaagttagaatcaagaagtatattttgcggctttatatcac 21098745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 39132539 - 39132275
Alignment:
Q  23 tcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggta 122  Q
    ||||||||||| ||||||||||||||||  || ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  39132539 tcaactccttcaatattcatcattgttgatctttttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggta 39132440  T
Q  123 aattgaaaatccattcaggtgccatatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaa 222  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||| || |||  | |||||||| ||||   |||||||||||    
T  39132439 aattgaaaacccattcaggagccatatatcctcttgttcctctaatcattgagaattctgaattactattgacattgtttctatttctcagcttagacaa 39132340  T
Q  223 tccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  39132339 tccaaagtctgctaacttgggttgatagttagaatcaagaagtatattttgaggctttatatcac 39132275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 287
Target Start/End: Original strand, 26675261 - 26675498
Alignment:
Q  47 gttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgcca 146  Q
    ||||||||||||||||| |||||||||||||  ||||  ||||||||||||||||| || || || || || || || ||||||||||||||||||||||    
T  26675261 gttggactctttccggtaatcatctccaacaccacaattccataactataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgcca 26675360  T
Q  147 tatatcctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaatctgctaacttgggctg 246  Q
    | || |||| ||||||||| ||| ||||||| | |||   ||||| ||||||||| | || |  |||||||||||| ||||||||| |||  |||||  |    
T  26675361 tgtaacctcttgttcctctcatccttgagaaacttga---attattaagattgttcctatgtaatagcttagacaacccaaaatctactattttgggtcg 26675457  T
Q  247 aaagttagaatcaagaagtatattttgaggctttatatcac 287  Q
      | | ||| |||| |||||| |||||||||||||||||||    
T  26675458 gtaatcagagtcaataagtatgttttgaggctttatatcac 26675498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 26713623 - 26713755
Alignment:
Q  45 ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgc 144  Q
    ||||||||||||||||||| |||||||||||||  ||||| ||||| ||||||||||||||||| || || ||  | |  ||||||| ||||||||||||    
T  26713623 ttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgc 26713722  T
Q  145 catatatcctcgtgttcctctaatcattgagaa 177  Q
    ||| || |||||||| |||| |||| |||||||    
T  26713723 catgtaacctcgtgtccctcgaatccttgagaa 26713755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 26736859 - 26736991
Alignment:
Q  45 ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgc 144  Q
    |||||||||||||||| || |||||||||||||  ||||| ||||| ||||||||||||||||| || || ||  | |  ||||||| ||||||||||||    
T  26736859 ttgttggactctttcctgtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgc 26736958  T
Q  145 catatatcctcgtgttcctctaatcattgagaa 177  Q
    ||| || |||||||| |||| |||| |||||||    
T  26736959 catgtaacctcgtgtccctcgaatccttgagaa 26736991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 26732126 - 26731938
Alignment:
Q  52 actctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgccatatat 151  Q
    |||||| ||||| |||||||| | ||  ||||| ||||| ||||||||||| || || || || || || || ||||||||||||||||||||||| ||     
T  26732126 actcttcccggtaatcatctctagcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaa 26732027  T
Q  152 cctcgtgttcctctaatcattgagaatcctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaatctgctaacttggg 243  Q
    |||| ||||||||| ||| ||||||| | |||   ||||||||||||||| |  | | ||| ||||||||| |||||||| |||| ||||||    
T  26732026 cctcttgttcctctcatccttgagaaacttga---attatcaagattgttcctttgtagtaacttagacaacccaaaatccgctaccttggg 26731938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 26690787 - 26690627
Alignment:
Q  80 acaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgccatatatcctcgtgttcctctaatcattgagaatc 179  Q
    ||||| ||||| ||||||||||| || || || || || || || ||||||||||||||||||||||| || |||| ||||||||| ||| ||||||| |    
T  26690787 acaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaacctcttgttcctctcatccttgagaaac 26690688  T
Q  180 ctgaactattatcaagattgtttcgattttgtagcttagacaatccaaaatctgctaacttggg 243  Q
     |||   ||||||||||||||| |  | | ||| ||||||||| |||||||| |||| ||||||    
T  26690687 ttga---attatcaagattgttcctttgtagtaacttagacaacccaaaatccgctaccttggg 26690627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 26750795 - 26750919
Alignment:
Q  45 ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgc 144  Q
    ||||||||||||||||||| |||||||||||||  || || ||||| |||||||| ||||||||||| || ||  | |  ||||||| ||||||||||||    
T  26750795 ttgttggactctttccggtaatcatctccaacacaacgactccatagctataaacgtccactttagaagtgatttgcatgttgaaaacccattcaggtgc 26750894  T
Q  145 catatatcctcgtgttcctctaatc 169  Q
    ||| || |||| ||| |||| ||||    
T  26750895 catgtaacctcttgtccctcgaatc 26750919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 26743870 - 26743933
Alignment:
Q  45 ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccacttt 108  Q
    ||||||||||||||||||| |||||||||||||  || || ||||| |||||||||||||||||    
T  26743870 ttgttggactctttccggtaatcatctccaacacaacgactccatagctataaacatccacttt 26743933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 26694976 - 26694851
Alignment:
Q  52 actctttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgccatatat 151  Q
    |||||| ||||| |||||||| | ||  ||||| ||||| ||||||||||| || || || || || || || |||||||||||||||||| |||| ||     
T  26694976 actcttcccggtaatcatctctagcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtcccatgtaa 26694877  T
Q  152 cctcgtgttcctctaatcattgagaa 177  Q
    |||| ||||||||| ||| |||||||    
T  26694876 cctcttgttcctctcatccttgagaa 26694851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 47212046 - 47212153
Alignment:
Q  57 ttccggttatcatctccaacaatacaaccccataactataaacatccactttagatgttatcggtaaattgaaaatccattcaggtgccatatatcctcg 156  Q
    |||| |||||||| |||||||  || |  ||||| ||||||||||| |||||||||||||| |    ||| |||||||| ||||||||||| || ||||     
T  47212046 ttccagttatcatttccaacacaaccattccatagctataaacatcaactttagatgttattgaatgattcaaaatccactcaggtgccatgtaacctct 47212145  T
Q  157 tgttcctc 164  Q
    ||||||||    
T  47212146 tgttcctc 47212153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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