View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_low_37 (Length: 250)

Name: NF17777_low_37
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_low_37
NF17777_low_37
[»] chr2 (6 HSPs)
chr2 (114-196)||(2596407-2596489)
chr2 (115-192)||(2581720-2581797)
chr2 (12-80)||(2596258-2596326)
chr2 (12-78)||(2589183-2589249)
chr2 (12-78)||(2581569-2581635)
chr2 (12-57)||(2584831-2584876)
[»] chr3 (2 HSPs)
chr3 (12-78)||(21620765-21620831)
chr3 (12-78)||(21642435-21642501)
[»] chr6 (1 HSPs)
chr6 (12-78)||(30399374-30399440)
[»] chr8 (2 HSPs)
chr8 (12-78)||(29157299-29157365)
chr8 (140-196)||(29157419-29157475)
[»] chr7 (1 HSPs)
chr7 (12-78)||(46769622-46769688)
[»] chr4 (1 HSPs)
chr4 (140-184)||(19359602-19359646)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 2596407 - 2596489
Alignment:
Q  114 tttatggccacttgatgtctttcttctaggtttcttcgaagacatttgaagcaactcactatttaataattgttttgttttat 196  Q
    ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2596407 tttatggccccttgatgtctttgttttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttat 2596489  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 2581720 - 2581797
Alignment:
Q  115 ttatggccacttgatgtctttcttctaggtttcttcgaagacatttgaagcaactcactatttaataattgttttgtt 192  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  2581720 ttatggccccttaatgtctttcttttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt 2581797  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 2596258 - 2596326
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccatttat 80  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  2596258 tggttctctgccaaggtttatgtcgaaagtttggtttctgacatttagaaagcacgtcaagacatttat 2596326  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 2589183 - 2589249
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  2589183 tggttctctaccaaggtttatgttgaaagtttggtttctgatatttagaaagcacgtcaagacattt 2589249  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 2581569 - 2581635
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||| || || ||||||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  2581569 tggttctttgtcaaggtttatgttgaaagcttggtttctgacatttagaaagcacgtcaagacattt 2581635  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 2584831 - 2584876
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcattt 57  Q
    |||||||||| || || ||||||||||||||||||||||| |||||    
T  2584831 tggttctctgtcaaggcttatgttgaaagtttggtttctgacattt 2584876  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 21620831 - 21620765
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  21620831 tggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacattt 21620765  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 21642501 - 21642435
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  21642501 tggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacattt 21642435  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 30399374 - 30399440
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  30399374 tggttctctaccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacattt 30399440  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 29157299 - 29157365
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||||||||| ||||| ||||||||| |||||||||  |||||||||||||||||||| |||||    
T  29157299 tggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacattt 29157365  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 29157419 - 29157475
Alignment:
Q  140 taggtttcttcgaagacatttgaagcaactcactatttaataattgttttgttttat 196  Q
    ||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||    
T  29157419 taggtttcttcggggacattggaagcaactcacaatttaataattgttttgttttat 29157475  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 46769622 - 46769688
Alignment:
Q  12 tggttctctgccatggtttatgttgaaagtttggtttctggcatttagaaagcacgtcaagccattt 78  Q
    ||||||||||||| |||||| ||||||||||| ||||||  ||||||||||||| |||||| |||||    
T  46769622 tggttctctgccaaggtttacgttgaaagttttgtttcttacatttagaaagcatgtcaagacattt 46769688  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 19359602 - 19359646
Alignment:
Q  140 taggtttcttcgaagacatttgaagcaactcactatttaataatt 184  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||    
T  19359602 taggtttctttgaaaacatttgaagcaactcactacttaataatt 19359646  T

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