View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_43 (Length: 238)
Name: NF17777_low_43
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29227011 - 29227234
Alignment:
| Q |
1 |
acaaactcttcatacaaaatttaccctcccgccnnnnnnncaaaatctacannnnnnn-cttccttaaatgaattcaattttgttttgcattcaaaagac |
99 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227011 |
acaaactcttcatacaaaatttaccctcccgccaaaaaaacaaaatctacattttttttcttccttaaatgaattcaattttgttttgcattcaaaagac |
29227110 |
T |
|
| Q |
100 |
aattagtatgtcaacattaatctacctttcattttcaaaatgtacttaattttgtatttatgccaataaagttaagattaattcatttttatgcaggtga |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29227111 |
aattagtatgtcaacattaatctacctttcattttcaaaatgtacttaattttgtatttatgtcaataaagttaagattaattcatttttatgcaggtga |
29227210 |
T |
|
| Q |
200 |
atcaaaatctctacggggacaatc |
223 |
Q |
| |
|
|||||||||||||||| ||||||| |
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|
| T |
29227211 |
atcaaaatctctacggagacaatc |
29227234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 30917723 - 30917662
Alignment:
| Q |
138 |
aatgtacttaattttgtatttatgccaataaagttaagattaattcatttttatgcaggtga |
199 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||| || | |||||||||||||||| |
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| T |
30917723 |
aatgtacttaattttgtattttagccaataaagctaagatcaagtaatttttatgcaggtga |
30917662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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