View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_46 (Length: 232)
Name: NF17777_low_46
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10116496 - 10116282
Alignment:
| Q |
1 |
tgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaa |
100 |
Q |
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| T |
10116496 |
tgcgagagttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaa |
10116397 |
T |
|
| Q |
101 |
ctttcaattaaaaacatatatgattatgtaagtagccttagtttctctgttctctctattgttacattagcttccaccatttgatagaatacagtgcaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |
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| T |
10116396 |
ctttcaattaaaaacatatatgattatgtaagtagccttagtttctctgttctctctattgctacattagcttccaccttttgatagaacacagtgcaag |
10116297 |
T |
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| Q |
201 |
tttgtgtgtaaaact |
215 |
Q |
| |
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||||||||||||||| |
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| T |
10116296 |
tttgtgtgtaaaact |
10116282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 45810223 - 45810056
Alignment:
| Q |
7 |
agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
106 |
Q |
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| T |
45810223 |
agttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaactttca |
45810124 |
T |
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| Q |
107 |
----attaaaaacatatatgattatgtaagtagccttagtttctctgttctctctattgttacattagcttc |
174 |
Q |
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| T |
45810123 |
atttattgataacatatatga-tatgtaagtag---tattttctctattctctcctttgtttcattagcttc |
45810056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 12105613 - 12105715
Alignment:
| Q |
7 |
agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
106 |
Q |
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| T |
12105613 |
agttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaactttca |
12105712 |
T |
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| Q |
107 |
att |
109 |
Q |
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||| |
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| T |
12105713 |
att |
12105715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 1445771 - 1445672
Alignment:
| Q |
7 |
agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
106 |
Q |
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||||||||||||||||||||| ||||| | | | ||||| ||| | |||||||||| || |||||||| ||||||||||| ||||||||||| ||||| |
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| T |
1445771 |
agttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttctgcaacatgtaaattttca |
1445672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 410623 - 410685
Alignment:
| Q |
47 |
tctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaatt |
109 |
Q |
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| T |
410623 |
tctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaatt |
410685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 1403837 - 1403941
Alignment:
| Q |
5 |
agagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaacttt |
104 |
Q |
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||||||||||||||||||||||||||||| | | || | | ||||| ||||||||| |||||||||||||||| ||| ||| |||||||| ||||| |
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| T |
1403837 |
agagttttagaaactatgtcaatctggtgctacaagagatggcctaaagcagaaagagtattatcctcatgtccaaaggcatctgcaacatgtcaactta |
1403936 |
T |
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| Q |
105 |
caatt |
109 |
Q |
| |
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||||| |
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| T |
1403937 |
caatt |
1403941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 1400116 - 1400220
Alignment:
| Q |
5 |
agagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaacttt |
104 |
Q |
| |
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|||||||||||||||||| |||||||||| | | || | | | ||| ||||||||| |||| ||||||||||||||||||| ||||||| |||||| |
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| T |
1400116 |
agagttttagaaactatgccaatctggtgctacatgagatggcccaaagcagaaagagtattattctcatgtccaagggcttctgtaacatgtcaacttt |
1400215 |
T |
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| Q |
105 |
caatt |
109 |
Q |
| |
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||||| |
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| T |
1400216 |
caatt |
1400220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 48675153 - 48675098
Alignment:
| Q |
51 |
aaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
106 |
Q |
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|||||||||| | |||||||||||||||||||| ||| |||||||| |||||||| |
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| T |
48675153 |
aaatagaaagggaattatcctcatgtccaagggcctctgcaacatgtcaactttca |
48675098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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