View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_5 (Length: 578)
Name: NF17777_low_5
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Original strand, 26324833 - 26325398
Alignment:
| Q |
14 |
aatatgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccac |
113 |
Q |
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| T |
26324833 |
aatatgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccac |
26324932 |
T |
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| Q |
114 |
gtttcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctca |
213 |
Q |
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| T |
26324933 |
gtttcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctca |
26325032 |
T |
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| Q |
214 |
ttcatcaaattctttcattctctttttgtttcatcaaacggtttttatccaacttttatttctggcggcagcgacgcttttatttagcgccgctactgcc |
313 |
Q |
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| T |
26325033 |
ttcatcaaattctttcattctctttttgtttcatcaaacggtttttatccaactttcatttctggcggcagcgacgcttttatttagcgccgctactgcc |
26325132 |
T |
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| Q |
314 |
atcaccatcattccataaacaatttttctc-aaagttttgcttccaccatggcaaacagaaaaaacaatccaagtattgaagatgcaacgtttaaattta |
412 |
Q |
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| T |
26325133 |
atcaccatcattccataaacaatttttctcaaaagttttgcttccaccatggcaaacagaaaaaacaatccaagtattgaaggtgcaacgtttaaatttg |
26325232 |
T |
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| Q |
413 |
atgatgatgatgccattgacccaaactttttcaatatgagtaaccctacactaaatgatatatacatgaataacaataacaatggacccacaaatttttc |
512 |
Q |
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| T |
26325233 |
atgatgatgatgccattgacccaaattttttcaacatgagtaaccctacactaaatgatatatacatgaataacaataacaacggacccacaaatttgtc |
26325332 |
T |
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| Q |
513 |
ccaaccaaatcatcattccaatttgagtagccctaatccaaccaatttgtccattaatagaaataa |
578 |
Q |
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| T |
26325333 |
ccaaccaaatcatcattccaatttgagtaaccctaatccaaccaatttgtccattaatagaaataa |
26325398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 48320906 - 48320850
Alignment:
| Q |
129 |
aactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctcttt |
186 |
Q |
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| T |
48320906 |
aactgaaacgacttcatgca-ttttcaaacggtaattaaccgccaattgcacctcttt |
48320850 |
T |
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