View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_50 (Length: 214)
Name: NF17777_low_50
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_50 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 25196602 - 25196783
Alignment:
| Q |
14 |
aatataatggtaagatcttgggagaataaaatagaaggagatggggtaatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataa |
113 |
Q |
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| T |
25196602 |
aatataatggtaagatcttgggagactaaaatagaaggagatggggtgatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataa |
25196701 |
T |
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| Q |
114 |
ttgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctc |
195 |
Q |
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| T |
25196702 |
ttgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctc |
25196783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 1762077 - 1762191
Alignment:
| Q |
63 |
tttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatatt |
162 |
Q |
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| T |
1762077 |
tttcagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaatttt |
1762176 |
T |
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| Q |
163 |
cgcaaagcttagaga |
177 |
Q |
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| T |
1762177 |
ttcaaagcttagaga |
1762191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 19207051 - 19207222
Alignment:
| Q |
24 |
taagatcttgggagaataaaatagaaggagatggggtaatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagt |
123 |
Q |
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| T |
19207051 |
taagatcttgggagagtagaatagaaagagatggagtagtttcagagattaaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagt |
19207150 |
T |
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| Q |
124 |
gtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctc |
195 |
Q |
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| T |
19207151 |
tagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagcttagagatcttataaaactcctctc |
19207222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 9368 - 9548
Alignment:
| Q |
15 |
atataatggtaagatcttgggagaataaaatagaaggagatggggtaatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataat |
114 |
Q |
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|||||||| ||||||||||||||| || ||| ||| | ||||| ||| |||||||||| | | |||| |||||| ||||||||||||| ||||||||||| |
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| T |
9368 |
atataatgctaagatcttgggagagtagaattgaaagtgatggagtagtttcagagataaaaattgacgaagatctgcgaagcttgtcagctgacataat |
9467 |
T |
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| Q |
115 |
tgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagatcttataaaactcctctc |
195 |
Q |
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| T |
9468 |
tgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagggatcttctaaaactcctctc |
9548 |
T |
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