View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_6 (Length: 502)
Name: NF17777_low_6
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 35 - 493
Target Start/End: Complemental strand, 53294852 - 53294394
Alignment:
| Q |
35 |
aaagaaaattaaagagggtttaagcatgatatacctatcaagtcagagggattttttccgttgcaaaatcgaccagttggaatccctccctcaaaatctt |
134 |
Q |
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| T |
53294852 |
aaagaaaattaaaaagggtttaagcatgatataccgatcaagtcagagggattttttccgttgcaaaatcgaccagttggaatccctccctcaaaatctt |
53294753 |
T |
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| Q |
135 |
gaccataaggagggaaattgcacttgacgattgttttgatgttattgttatttcctgtatccattatagaatctccaaaagctatgagtgcaggaattgt |
234 |
Q |
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| T |
53294752 |
gaccataaggagggaaattgcacttgacgattgttttgatgttattgttatttcctgtatccatgatagaatctccaaaagctatgagtgcaggaattgt |
53294653 |
T |
|
| Q |
235 |
aacatttggtggtagtttaaccaatgcgttcgttctatacgataaaactaataacaacatgaaacgtaataatattaagctatttggtgaataagtgcca |
334 |
Q |
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| T |
53294652 |
aacatttggtggtagtttaaccaatgcgttcgttctatacgataaaactaacaacaacatgaaacgtaataatattaagctatttggtgaataagtgcca |
53294553 |
T |
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| Q |
335 |
ggcagcttcatcataattaacacagccatatagatagctatctactgtgtatattttctcatcaagcaagggatagctttttcatctcttttggtacgta |
434 |
Q |
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| T |
53294552 |
ggcagcttcatcataattaacacagccatatagatagctatctactgtgtatattttctcatcaagcaagggatagctttttcatctcttttggtacgta |
53294453 |
T |
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| Q |
435 |
ctttgcgtcaatttatagctagcacgtctttagtccattatttaatgcatgagaataat |
493 |
Q |
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| T |
53294452 |
ctttgcgtcaatttatagctagcacgtctttagtccattatttaatgcatgagaataat |
53294394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 8286114 - 8285955
Alignment:
| Q |
87 |
tttttccgttgcaaaatcgaccagttggaatccctccctcaaaatcttgaccataaggagggaaattgcacttgacgattgttttgatgttattgttatt |
186 |
Q |
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||||||| |||||||| ||||||||||| | || || | |||||||| |||||||||||||||||||| ||||| | ||||||| || || || || |
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| T |
8286114 |
tttttccattgcaaaaacgaccagttgggacaccaccttgaaaatctttgccataaggagggaaattgcatttgaccaaagttttgaggtcgttattgtt |
8286015 |
T |
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| Q |
187 |
tcctgtatccattatagaatctccaaaagctatgagtgcaggaattgtaacatttggtgg |
246 |
Q |
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| T |
8286014 |
tcctgaatcaactattgaatctccaaatgctatcactgctggaactgtaacatttggtgg |
8285955 |
T |
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