View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17778_high_11 (Length: 275)
Name: NF17778_high_11
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 29286375 - 29286622
Alignment:
| Q |
14 |
agacggaaaatgaatatgattctgaagaaattttatattatagagcctacttcaaggcaagctgacaaataaataacctcaacaaattgtttttctgtgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29286375 |
agacggaaaatgaatatgattctgaagaaattttatattatagagcatacttcaaggcaagctgacaaataaataacctcaacaaattgtttttctgtgt |
29286474 |
T |
|
| Q |
114 |
cctttggccgtgtttaaaaagaagacatcgaaactttgatcaaataagttgagctttgtaatggcctta-tgttgcggatatttttgttatctgatatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
29286475 |
actttggccgtgtttaaaaagaagacatcgaaactttgatcaaataagttgagctttgtaatggccttattgttgcggatatttttgttat-tgatatct |
29286573 |
T |
|
| Q |
213 |
ataattttgcatgagttattggtttacttattgccaaccttcttccttg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29286574 |
ataattttgcatgagttattggtttacttattgccaaccttcttccttg |
29286622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 35234825 - 35235074
Alignment:
| Q |
18 |
ggaaaatgaatatgattctgaagaaattttatattatagagcctacttcaaggcaagctgacaaataaataacctcaacaaattgtttttctgtgtcctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |
|
|
| T |
35234825 |
ggaaaatgaatatgattctgaagaaattttatattatagagcctacttcaaggcaagctgacaaataaataacctcaacaaattgttttgctgcgtactt |
35234924 |
T |
|
| Q |
118 |
tggccgtgtttaaaaagaag------acatcgaaactttgatcaaataagttgagctttgtaatggccttat-gttgcggatatttttgttatctgatat |
210 |
Q |
| |
|
|||| ||||||| | |||| |||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35234925 |
tggcggtgtttaccacgaagtcgaagacattgaaactttgatcaaagaagttgagctttgta-tggccttattgttgctgatatttttgttatctgatat |
35235023 |
T |
|
| Q |
211 |
ctataattttgcatgagttattggtttacttattgccaaccttcttccttg |
261 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35235024 |
ctataattttgtatgagttattggtttacttattgccaaccttcttccttg |
35235074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 29258554 - 29258465
Alignment:
| Q |
173 |
aatggccttatg-ttgcggatatttttgttatctgatatctataattttgcatgagttattggtttacttattgccaaccttcttccttg |
261 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| || |||||||||||| |||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
29258554 |
aatggccttattattgctgatatttttgttatctaatctctataattttgtatgagttattggtttatttattgtcaaccttcctccttg |
29258465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 29262299 - 29262357
Alignment:
| Q |
183 |
tgttgcggatatttttgttatctgata---tctataattttgcatgagttattggttta |
238 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
29262299 |
tgttgctgatatttttgttatctaataatatctataattttgtatgagttattggttta |
29262357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University