View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17778_high_13 (Length: 214)

Name: NF17778_high_13
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17778_high_13
NF17778_high_13
[»] chr1 (4 HSPs)
chr1 (59-200)||(10412069-10412210)
chr1 (55-200)||(10417792-10417937)
chr1 (86-200)||(10421711-10421823)
chr1 (15-57)||(10412215-10412257)
[»] chr2 (4 HSPs)
chr2 (54-197)||(30631130-30631273)
chr2 (54-197)||(30633235-30633378)
chr2 (54-197)||(30660964-30661107)
chr2 (54-197)||(30669644-30669787)
[»] chr5 (7 HSPs)
chr5 (54-200)||(35364802-35364948)
chr5 (54-200)||(35752759-35752905)
chr5 (54-197)||(35374348-35374491)
chr5 (68-199)||(35421624-35421755)
chr5 (68-199)||(35434969-35435100)
chr5 (54-200)||(35404523-35404669)
chr5 (24-57)||(35364760-35364793)
[»] chr3 (1 HSPs)
chr3 (67-200)||(1153170-1153303)
[»] chr7 (1 HSPs)
chr7 (86-197)||(29625226-29625337)
[»] chr8 (2 HSPs)
chr8 (54-150)||(13563306-13563402)
chr8 (21-57)||(13563264-13563300)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 10412210 - 10412069
Alignment:
Q  59 ggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcagattac 158  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||  || | |    
T  10412210 ggtcgtcgacacatgagagtttctgtcttgcatttggaaaatcaaaacttgggtggtactcttggaccatccttgggaaatctaacatttcttcgaatgc 10412111  T
Q  159 tcaatctttcaaatgtcaacttgcatggtgaaattccaaaac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  10412110 tcaacctttcaaatgtcaacttgcatggtgaaattccaaaac 10412069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 10417937 - 10417792
Alignment:
Q  55 atgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcaga 154  Q
    |||||||| ||||||||||||||| |||  ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10417937 atgtggtcgtcgtcacatgagagtctcttccttgcatttggaaaatcaaacattgggtggtactcttggaccatccttgggaaatctaacatttctcaga 10417838  T
Q  155 ttactcaatctttcaaatgtcaacttgcatggtgaaattccaaaac 200  Q
     |||| || |||  ||| ||  ||||| ||||| ||||||||||||    
T  10417837 atacttaaacttaaaaaagttgacttgtatggtaaaattccaaaac 10417792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 10421823 - 10421711
Alignment:
Q  86 ttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcagattactcaatctttcaaatgtcaacttgcatg 185  Q
    |||||||| || ||||||| ||||||||||||||  |||||||| ||| |||||||||||||||| |||  |||| | |||||||| ||  |||||||||    
T  10421823 ttgcatttcgagaatcaaacattgggtggtactc--ggaccatcattgagaaatctaacatttcttagaaaactctacctttcaaacgttgacttgcatg 10421726  T
Q  186 gtgaaattccaaaac 200  Q
    |||||||||||||||    
T  10421725 gtgaaattccaaaac 10421711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 10412215 - 10412257
Alignment:
Q  15 tcaacaccctgccattcacagaaatgtagagactcgttccatg 57  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  10412215 tcaactccctgccattcacagaaatgtagagactcattccatg 10412257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 30631130 - 30631273
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| ||||||||||||||| |||| ||||||||| |||||||||| ||| ||||| ||||| ||| |||||||||||||||||||||||||  |    
T  30631130 catgtggtcgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatctaacatttcttcg 30631229  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaa 197  Q
    | | ||||| ||||||||||||||||||||||||||||||||||    
T  30631230 aatgctcaacctttcaaatgtcaacttgcatggtgaaattccaa 30631273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 30633235 - 30633378
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| ||||||||||||||| |||| ||||||||| |||||||||| ||| ||||| ||||| ||| |||||||||||||||||||||||||  |    
T  30633235 catgtggtcgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatctaacatttcttcg 30633334  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaa 197  Q
    | | ||||| ||||||||||||||||||||||||||||||||||    
T  30633335 aatgctcaacctttcaaatgtcaacttgcatggtgaaattccaa 30633378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 30660964 - 30661107
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| ||||||||||||||| |||| ||||||||| |||||||||| ||| ||||| ||||| ||| |||||||||||||||||||||||||  |    
T  30660964 catgtggtcgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatctaacatttcttcg 30661063  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaa 197  Q
    | | ||||| ||||||||||||||||||||||||||||||||||    
T  30661064 aatgctcaacctttcaaatgtcaacttgcatggtgaaattccaa 30661107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 30669644 - 30669787
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| |||||||||||||||  ||| ||||||||| |||||||||| ||| ||||| ||||| ||| |||||||||||||| ||||||||||       
T  30669644 catgtggtcgtcgtcacatgagagtcactgccttgcatttggaaaatcaaacatttggtggcactcttggatcatccttgggaaatttaacatttcttca 30669743  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaa 197  Q
    |   ||||  ||||||||||||||||||||||||||||||||||    
T  30669744 aaagctcagcctttcaaatgtcaacttgcatggtgaaattccaa 30669787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 35364802 - 35364948
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| |||||||||||||||   |   |||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||    
T  35364802 catgtggtcgtcgtcacatgagagtcatttctttgcatttggagaatcaaatattgggtggtactctcggaccatcattgggaaatctaacatttcttag 35364901  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaaaac 200  Q
    |  |||| | |||||||| ||| ||||||||||||||||||||||||    
T  35364902 aaaactctacctttcaaacgtcgacttgcatggtgaaattccaaaac 35364948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 35752759 - 35752905
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| ||||||||||||||| |||  ||||||||| |||||||||| ||||||||| ||||| |||||||| ||||| ||| |||||||||||||    
T  35752759 catgtggtcgtcgtcacatgagagtctcttccttgcatttggaaaatcaaacattgggtggcactcttggaccatctttgggtaatttaacatttctcag 35752858  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaaaac 200  Q
    |||||||   |||  |||||| ||||||||||||||| |||||||||    
T  35752859 attactccgacttagaaatgttaacttgcatggtgaagttccaaaac 35752905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 35374348 - 35374491
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| ||||||||||||||| |||| ||||||||| |||||||||| | ||||||| ||||| |||||||| |||||||||||||||||| ||||    
T  35374348 catgtggtcgtcgtcacatgagagtctctgccttgcatttggaaaatcaaacactgggtggcactctcggaccatcattgggaaatctaacatttatcag 35374447  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaa 197  Q
    |  ||| || |||  |||||| || |||||||||||||||||||    
T  35374448 aagactaaagcttagaaatgttaatttgcatggtgaaattccaa 35374491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 35421624 - 35421755
Alignment:
Q  68 cacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcagattactcaatcttt 167  Q
    ||||||||||| |||||||||||||| ||||||||||  | |||||||||||| ||||||||||| ||||||||||| |||||||||  |||||| ||||    
T  35421624 cacatgagagtctctgtcttgcatttggaaaatcaaaattggggtggtactcttggaccatccttaggaaatctaacctttctcagaaaactcaaacttt 35421723  T
Q  168 caaatgtcaacttgcatggtgaaattccaaaa 199  Q
    | ||  || | ||||| |||||||||||||||    
T  35421724 ccaacatcgatttgcacggtgaaattccaaaa 35421755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 35434969 - 35435100
Alignment:
Q  68 cacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcagattactcaatcttt 167  Q
    ||||||||||| |||||||||||||| ||||||||||  | |||||||||||| ||||||||||| ||||||||||| |||||||||  |||||| ||||    
T  35434969 cacatgagagtctctgtcttgcatttggaaaatcaaaattggggtggtactcttggaccatccttaggaaatctaacctttctcagaaaactcaaacttt 35435068  T
Q  168 caaatgtcaacttgcatggtgaaattccaaaa 199  Q
    | ||  || | ||||| |||||||||||||||    
T  35435069 ccaacatcgatttgcacggtgaaattccaaaa 35435100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 35404523 - 35404669
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcag 153  Q
    ||||||||| || ||||| |||||| |||| ||||| ||| |||||||||| ||||||||| ||||| |||||||| |||||||||||||| ||||| |     
T  35404523 catgtggtcgtcatcacacgagagtctctgccttgcgtttggaaaatcaaacattgggtggcactcttggaccatcattgggaaatctaacctttcttac 35404622  T
Q  154 attactcaatctttcaaatgtcaacttgcatggtgaaattccaaaac 200  Q
    | | || || |||  ||| ||||||||| |||||| |||||||||||    
T  35404623 aattctaaaacttagaaaggtcaacttgtatggtggaattccaaaac 35404669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 35364793 - 35364760
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatg 57  Q
    |||||||||||||||||||||||||| |||||||    
T  35364793 tgccattcacagaaatgtagagactcattccatg 35364760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 1153170 - 1153303
Alignment:
Q  67 tcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcagattactcaatctt 166  Q
    |||||||||||| ||| |||||||||| || |||||||  | |||||||||||| | || | |||||||||||||||||||||| | | ||||||| |||    
T  1153170 tcacatgagagtctctatcttgcatttggagaatcaaacctggggtggtactcttgaacgagccttgggaaatctaacatttctaacaatactcaagctt 1153269  T
Q  167 tcaaatgtcaacttgcatggtgaaattccaaaac 200  Q
    |||||| ||  |||||||||||||||||||||||    
T  1153270 tcaaatatcggcttgcatggtgaaattccaaaac 1153303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 29625337 - 29625226
Alignment:
Q  86 ttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttctcagattactcaatctttcaaatgtcaacttgcatg 185  Q
    |||| ||| ||||| |||| ||||||||||||| | || ||||| |||||||||||||| ||||||||| | ||||  |||  | | ||| |||||||||    
T  29625337 ttgcgtttggaaaaccaaacattgggtggtactattgggccatcattgggaaatctaacctttctcagagtgctcatacttgtacacgtcgacttgcatg 29625238  T
Q  186 gtgaaattccaa 197  Q
    ||||||||||||    
T  29625237 gtgaaattccaa 29625226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 13563306 - 13563402
Alignment:
Q  54 catgtggtcatcgtcacatgagagtttctgtcttgcatttagaaaatcaaatattgggtggtactctgggaccatccttgggaaatctaacatttct 150  Q
    ||||||||  |||||||||| |||| |||| |||||||||  | ||||||| || ||||| |||| | |||||||||||||||||| |||| |||||    
T  13563306 catgtggtggtcgtcacatgcgagtctctgccttgcatttgaagaatcaaacatggggtgctacttttggaccatccttgggaaatttaacctttct 13563402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 13563300 - 13563264
Alignment:
Q  21 ccctgccattcacagaaatgtagagactcgttccatg 57  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13563300 ccctgccattcacagaaatgtagagactcattccatg 13563264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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