View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17778_high_9 (Length: 298)
Name: NF17778_high_9
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 48471019 - 48471293
Alignment:
| Q |
8 |
ataatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctctgaa |
107 |
Q |
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| T |
48471019 |
ataatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctctgaa |
48471118 |
T |
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| Q |
108 |
gcttcaatttcattactggaaaaataataaccagatttaacccaggaagttgtgtctgcaattgagtaagatgtgagaaagaggaagacaaggaagatag |
207 |
Q |
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| T |
48471119 |
gcttcaatttcattactggaaaaataataaccagatttaacccaggaagttgtgtctgcaattgagtaagatgtgagaaagaggaagacaaggaagatag |
48471218 |
T |
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| Q |
208 |
aaaaatgttttgaaaacattgttagtattgtttaaggatgagttatcttgttatcataagactccttaaccctgt |
282 |
Q |
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| T |
48471219 |
aaaaatgttttgaaaacattgttagtattgtttaaggatgagttatcttcttatcataagactccttaaccctgt |
48471293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 48479383 - 48479622
Alignment:
| Q |
10 |
aatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctctgaagc |
109 |
Q |
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| T |
48479383 |
aatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctccgaagc |
48479482 |
T |
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| Q |
110 |
ttcaatttcattactggaaaaataataaccagatttaacccaggaagttgtgtctgcaattgagtaagatgtgagaaagaggaagacaag---gaagata |
206 |
Q |
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| T |
48479483 |
ttccatttcattactggaaaaataataaccagctttaacccaggaagttgtgtctgcaattaagtaagatgtgagaaagaggaagacaaggatgatgata |
48479582 |
T |
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| Q |
207 |
gaaaaatgttttgaaaacattgt-tagtattgtttaagga |
245 |
Q |
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| T |
48479583 |
gcaaaatgttttgaaaacattgtattgtattgtttaagga |
48479622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 48882961 - 48882739
Alignment:
| Q |
10 |
aatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctctgaagc |
109 |
Q |
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| T |
48882961 |
aatactcagagtcatttgtaaagatgatgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctccgaagc |
48882862 |
T |
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| Q |
110 |
ttcaatttcattactggaaaaataataaccagatttaacccaggaagttgtgtctgcaattgagtaagatgtgagaaagaggaagaca---aggaagata |
206 |
Q |
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| T |
48882861 |
ttccatttcattactggaaaaataataaccggcttttacccaaaaagttgtgtctgattttgagtaagatgtgaaaaagaggaagacagggatgatgata |
48882762 |
T |
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| Q |
207 |
gaaaaatgttttgaaaacattgt |
229 |
Q |
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| T |
48882761 |
gcgaaatgttttgaaaacattgt |
48882739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 48487869 - 48488092
Alignment:
| Q |
27 |
ataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgttgattttatctctgaagcttcaatttcattactgg |
126 |
Q |
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|||||||| |||||| |||||| ||||| ||||||||||||||||| |||||||||||||| | |||||||| || |||||| ||||||| | | | |
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| T |
48487869 |
ataaagatattgtagtttgtggagtttataaaagcaaaagcacataaaaggtgtgtgaaaagattggattttatgtcagaagctgaaatttcactgcctg |
48487968 |
T |
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| Q |
127 |
aaaaataataaccagatttaacccaggaagttgtgtctgc---aattgagtaagatgtgagaaagaggaagacaaggaagatagaaaaatgttttgaaaa |
223 |
Q |
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| T |
48487969 |
aatagtaataaccagctttgatccaagaagttgtgtctgctgcaaatgagtgagatgtgagaaagaggaagacaaggaagatagcaaaatgatttgaaat |
48488068 |
T |
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| Q |
224 |
cattgttagtattgtttaaggatgagtt |
251 |
Q |
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| T |
48488069 |
catt----gtactgtttaaggatgagtt |
48488092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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