View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17778_low_1 (Length: 809)
Name: NF17778_low_1
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 1915847 - 1915442
Alignment:
| Q |
18 |
acttttgagactctaatatgtttatagtatccaacggcaaccaccaccaccaaaggaa-ggttaattagctaaaccaacatggaaaaacactcaaaaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915847 |
acttttgagactctaatatgtttatagtatccaacggcaaccaccaccaccaaaggaaaggttaattagctaaaccaacatggaaaaacactcaaaaggt |
1915748 |
T |
|
| Q |
117 |
tttgtccataaaaggccttccactagtcccatgaatatgcacacaacacaagctagttaactaactcatagcaaaatctactaaacattcatcacaaagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915747 |
tttgtccataaaaggccttccactagtcccatgaatatgcacacaacacaagctagttaactaactcatagcaaaatctactaaacattcatcacaaagc |
1915648 |
T |
|
| Q |
217 |
cctaattttgccatggcttcctataattccttcattttggcaattttcattgctatttccttctcaaacatggacattaccctagcagctcgcaatcttc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915647 |
cctaattttgccatggcttcctataattccttcattttggcaattttcattgctatttccttctcaaacatggacattaccctagcagctcgcaatcttc |
1915548 |
T |
|
| Q |
317 |
ttcagacaacaaatccaaccacacctacacttccaaaaccaacat---tgccacctttgccaacaatccctgcagcattgccaaaacctactcagccatc |
413 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915547 |
ttcagacaacaaatccaactacacctacacttccaaaaccaacattgctgccacctttgccaacaatccctgcagcattgccaaaacctactcagccatc |
1915448 |
T |
|
| Q |
414 |
tattcc |
419 |
Q |
| |
|
|||||| |
|
|
| T |
1915447 |
tattcc |
1915442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 493 - 795
Target Start/End: Complemental strand, 1915419 - 1915118
Alignment:
| Q |
493 |
ccaatcactttgccaacaatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatca |
592 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915419 |
ccaaacactttgccgacaatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatca |
1915320 |
T |
|
| Q |
593 |
tattatacattattcattagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttcnnnnn |
692 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915319 |
tattatacattgttcattagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttcttttt |
1915220 |
T |
|
| Q |
693 |
nncattattttatgtacttggagatatgttgtaataggtacactatatg---ataaataaaagttttatttcataatgtacgtacgtacatgcttatttt |
789 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1915219 |
ttcattattttatgtacttggagatatgttgtaataggtacactatatgataataaataaaagttttatttcataat----gtacgtacatgcttatttt |
1915124 |
T |
|
| Q |
790 |
cctatg |
795 |
Q |
| |
|
|||||| |
|
|
| T |
1915123 |
cctatg |
1915118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 478
Target Start/End: Complemental strand, 1915452 - 1915413
Alignment:
| Q |
439 |
ccatctattccacagttcaatcttccaccacttccaaaca |
478 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1915452 |
ccatctattccccagttcactcttccaccacttccaaaca |
1915413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University