View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17778_low_14 (Length: 234)

Name: NF17778_low_14
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17778_low_14
NF17778_low_14
[»] chr5 (11 HSPs)
chr5 (38-228)||(21081392-21081582)
chr5 (28-210)||(27416694-27416876)
chr5 (4-210)||(20952400-20952606)
chr5 (28-210)||(18384303-18384485)
chr5 (28-210)||(26197921-26198103)
chr5 (99-210)||(33943954-33944065)
chr5 (28-196)||(19381388-19381556)
chr5 (110-210)||(30450278-30450378)
chr5 (115-210)||(24296248-24296343)
chr5 (110-210)||(24416830-24416930)
chr5 (148-196)||(26040415-26040463)
[»] scaffold0163 (1 HSPs)
scaffold0163 (2-210)||(20021-20229)
[»] chr3 (8 HSPs)
chr3 (2-210)||(2159371-2159579)
chr3 (2-210)||(40089318-40089526)
chr3 (28-210)||(6426870-6427052)
chr3 (28-210)||(8977409-8977591)
chr3 (28-183)||(16406172-16406327)
chr3 (28-210)||(9541699-9541881)
chr3 (110-196)||(28360381-28360467)
chr3 (113-153)||(25507093-25507133)
[»] chr8 (9 HSPs)
chr8 (2-188)||(23745876-23746062)
chr8 (28-210)||(21208566-21208748)
chr8 (28-196)||(14887299-14887467)
chr8 (99-194)||(22835371-22835466)
chr8 (115-210)||(18236943-18237038)
chr8 (115-210)||(18246394-18246489)
chr8 (110-210)||(20748621-20748721)
chr8 (115-210)||(33597564-33597659)
chr8 (121-210)||(12919836-12919925)
[»] chr1 (1 HSPs)
chr1 (2-210)||(20175466-20175674)
[»] scaffold0066 (1 HSPs)
scaffold0066 (2-157)||(1799-1955)
[»] scaffold0145 (1 HSPs)
scaffold0145 (28-210)||(33497-33679)
[»] chr6 (6 HSPs)
chr6 (28-210)||(24927761-24927943)
chr6 (28-210)||(16902509-16902691)
chr6 (28-210)||(31361382-31361564)
chr6 (28-183)||(18164628-18164783)
chr6 (97-210)||(27746664-27746777)
chr6 (97-153)||(11378009-11378065)
[»] chr4 (5 HSPs)
chr4 (28-196)||(16269619-16269787)
chr4 (28-210)||(6696781-6696963)
chr4 (28-196)||(17155979-17156147)
chr4 (110-210)||(26816491-26816591)
chr4 (110-210)||(54695462-54695562)
[»] chr2 (8 HSPs)
chr2 (4-210)||(27165576-27165782)
chr2 (99-196)||(45018984-45019081)
chr2 (28-210)||(9509360-9509542)
chr2 (28-210)||(18655781-18655963)
chr2 (109-196)||(22103158-22103245)
chr2 (118-153)||(29847521-29847556)
chr2 (118-177)||(29862811-29862870)
chr2 (107-176)||(22906787-22906856)
[»] scaffold0313 (2 HSPs)
scaffold0313 (27-196)||(14119-14288)
scaffold0313 (105-196)||(40-131)
[»] scaffold0611 (1 HSPs)
scaffold0611 (28-196)||(2509-2677)
[»] chr7 (11 HSPs)
chr7 (28-210)||(16137780-16137962)
chr7 (28-210)||(6539040-6539222)
chr7 (28-210)||(26353895-26354077)
chr7 (28-210)||(32102943-32103125)
chr7 (28-210)||(46501677-46501859)
chr7 (28-196)||(9540850-9541018)
chr7 (52-210)||(5387511-5387669)
chr7 (28-210)||(8505612-8505794)
chr7 (28-210)||(44901920-44902102)
chr7 (99-196)||(18663519-18663616)
chr7 (110-210)||(15179736-15179836)
[»] scaffold0254 (1 HSPs)
scaffold0254 (28-210)||(13574-13756)
[»] scaffold0141 (1 HSPs)
scaffold0141 (105-196)||(30523-30614)
[»] scaffold0049 (2 HSPs)
scaffold0049 (105-196)||(84198-84289)
scaffold0049 (97-153)||(19201-19257)
[»] scaffold0059 (1 HSPs)
scaffold0059 (106-210)||(46020-46124)
[»] scaffold0764 (1 HSPs)
scaffold0764 (105-196)||(6489-6580)
[»] scaffold0572 (1 HSPs)
scaffold0572 (105-210)||(19-124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (99-196)||(32516-32613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (28-176)||(153135-153283)
[»] scaffold0028 (1 HSPs)
scaffold0028 (110-210)||(99976-100076)
[»] scaffold0010 (2 HSPs)
scaffold0010 (115-210)||(261085-261180)
scaffold0010 (115-210)||(263388-263483)
[»] scaffold0233 (1 HSPs)
scaffold0233 (110-210)||(6894-6994)
[»] scaffold0021 (1 HSPs)
scaffold0021 (97-153)||(167490-167546)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 21081582 - 21081392
Alignment:
Q  38 ccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcag 137  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  21081582 ccatgactgaatagctttctcaatttgagaggaacaaagtctggaatttggtatctgaacctcaagacaaaaccatcattggaacaagatgggtgttcag 21081483  T
Q  138 aaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaaaaagtctattttgatgat 228  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21081482 aaataaactggatgaaaatggtaaggttgtcagaaacaagccaagattagttgctcaaggttataatcaacaagaagtctattttgatgat 21081392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 27416694 - 27416876
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||| ||    
T  27416694 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaacat 27416793  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  27416794 gggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 27416876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 20952400 - 20952606
Alignment:
Q  4 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 103  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || || ||||| |||||||| || ||| |   ||||     
T  20952400 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaataaagtttggaatttagttccaaataatcaaa 20952499  T
Q  104 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 203  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  20952500 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 20952599  T
Q  204 tcaacaa 210  Q
    |||||||    
T  20952600 tcaacaa 20952606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 18384303 - 18384485
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18384303 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18384402  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18384403 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18384485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 26198103 - 26197921
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26198103 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26198004  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26198003 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26197921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 33943954 - 33944065
Alignment:
Q  99 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagat 198  Q
    |||||| |||||||||||||||||||||||||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| |    
T  33943954 tcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggt 33944053  T
Q  199 tataatcaacaa 210  Q
    || || ||||||    
T  33944054 tacaaccaacaa 33944065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 19381556 - 19381388
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||| | |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  19381556 tggattgaggccatgaaagaataactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 19381457  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
     ||| |||||||| || || |||||| | ||||||||||| |||||||| ||||| |||||||||||||    
T  19381456 aggttttcagaaacaagcttgatgaagaaggtaaggttgttagaaacaaagcaaggttagttgctcaag 19381388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 30450378 - 30450278
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  30450378 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 30450279  T
Q  210 a 210  Q
    |    
T  30450278 a 30450278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 24296343 - 24296248
Alignment:
Q  115 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  24296343 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 24296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 24416830 - 24416930
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||  |||||||||| || ||||| || |||||||  || ||||||||    
T  24416830 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagtcatcagaaacaaagctagattggtagctcaagggtacaatcaaca 24416929  T
Q  210 a 210  Q
    |    
T  24416930 a 24416930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 26040463 - 26040415
Alignment:
Q  148 gatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||||    
T  26040463 gatgaaaatggtaatgtaaccagaaacaaggcaagattagtagctcaag 26040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 20021 - 20229
Alignment:
Q  2 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 101  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||| |||||||     
T  20021 taaatgaagctatcattgatcaatcatggattgaagccatgactgaagagctttctcagtttgaaagaaacaaagtctggaatttagtacctgaacctcg 20120  T
Q  102 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| |||||||||||| ||||    
T  20121 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtcagaaacaaagcaagactagttgctcaaggttat 20220  T
Q  202 aatcaacaa 210  Q
    |||||||||    
T  20221 aatcaacaa 20229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 2159371 - 2159579
Alignment:
Q  2 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 101  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||||||| ||||| ||||| |     
T  2159371 taaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaagtctggaatttagtacctgaaccacg 2159470  T
Q  102 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||  |||||||||||| ||||    
T  2159471 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaaagcaaggctagttgctcaaggttat 2159570  T
Q  202 aatcaacaa 210  Q
    |||||||||    
T  2159571 aatcaacaa 2159579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 40089526 - 40089318
Alignment:
Q  2 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 101  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| ||||| ||||||||    
T  40089526 taaatgaagctatcattgatcaatcatggattgaagccatgactgaagaactttctcaatttgaaagaaacaaagtctggaatttagtacctgaacctca 40089427  T
Q  102 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 201  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||| |||| ||||||| ||||    
T  40089426 agacaaaactatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtaagaaacaaagcaagactagtagctcaaggttat 40089327  T
Q  202 aatcaacaa 210  Q
    |||||||||    
T  40089326 aatcaacaa 40089318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 6426870 - 6427052
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6426870 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6426969  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6426970 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6427052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 8977409 - 8977591
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8977409 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8977508  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8977509 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8977591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 16406172 - 16406327
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16406172 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16406271  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 183  Q
    |||| |||||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  16406272 gggttttcagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 16406327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 9541699 - 9541881
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9541699 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9541798  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||| | ||||||||||||| ||| || ||||||    
T  9541799 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcacggttagttgctcaaggttacaaccaacaa 9541881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 28360467 - 28360381
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||    
T  28360467 ccatcattggaacaagatgtgtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaag 28360381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 25507133 - 25507093
Alignment:
Q  113 tcattggaacaagatgggtgttcagaaataaactagatgaa 153  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  25507133 tcattggaacaagatgggtttttagaaacaaactagatgaa 25507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 23746062 - 23745876
Alignment:
Q  2 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 101  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||    
T  23746062 taaatgaagttatcactaatcaatcatggattgaagccatgacttaagagctttctcaatttgagagaaacaaagtctggaattcggtacctgaacctca 23745963  T
Q  102 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagt 188  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  23745962 agacgaaaccatcattggaacaagatgggtgttcagagatatactagatgaaaatggtaaggttgtcagaaacaaggaaagattagt 23745876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 21208748 - 21208566
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  21208748 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 21208649  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  21208648 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 21208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 14887467 - 14887299
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  || || |||||||| | ||| || |||||||| ||||| || || ||| |   ||||||||||| |||||||||||||||||    
T  14887467 tggattgaggccatgaaggaggaactttctcagtttgaaagaaacaaagtttggaacttagttccaaataatcaagacaaaagcatcattggaacaagat 14887368  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||| ||||| || || ||| ||   |||||||||||||||||||| ||||| |||||||||||||    
T  14887367 gggtgtttagaaacaagcttgataaaggaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 14887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 22835371 - 22835466
Alignment:
Q  99 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctca 194  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||| || |||||| | |||||||||||||||||||| ||||| |||||||||||    
T  22835371 tcaaggcaaaaccatcattggtacaagataggttttcagaaataagcttgatgaagaaggtaaggttgtcagaaacaatgcaaggttagttgctca 22835466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 18236943 - 18237038
Alignment:
Q  115 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18236943 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18237038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 18246394 - 18246489
Alignment:
Q  115 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18246394 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18246489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 20748621 - 20748721
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| | |||||||| || ||||| || |||||||  || ||||||||    
T  20748621 ccatcattggaacaagatgagtatttagaaataaactaaatgaagaaggaaaagttataagaaacaaagctagattggtagctcaagggtacaatcaaca 20748720  T
Q  210 a 210  Q
    |    
T  20748721 a 20748721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 33597659 - 33597564
Alignment:
Q  115 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||||||| |||||||| |||||||| ||| |||||||| | || || ||| ||||||| || || |||||||| || ||||  ||||||||||||    
T  33597659 attggaaccagatgggttttcagaaacaaattagatgaagaaggaaaagttatcagaaataaagcgagattagtcgcacaagggtataatcaacaa 33597564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 12919836 - 12919925
Alignment:
Q  121 acaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    ||||| ||||| |||||||| ||| |||||||| | || || ||||||||||| || || |||||||| || ||||  ||||||||||||    
T  12919836 acaaggtgggtcttcagaaacaaattagatgaagaaggaaaagttgtcagaaataaagctagattagtagcacaaggctataatcaacaa 12919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 20175466 - 20175674
Alignment:
Q  2 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 101  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||||||| |||||  |||| |     
T  20175466 taaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaagtctggaatttagtacctaaaccacg 20175565  T
Q  102 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||  |||||||||||| ||||    
T  20175566 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaaagcaaggctagttgctcaaggttat 20175665  T
Q  202 aatcaacaa 210  Q
    |||||||||    
T  20175666 aatcaacaa 20175674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 1955 - 1799
Alignment:
Q  2 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 101  Q
    ||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||  ||| |||    
T  1955 taaatgaagttatcattaatcaatcatggattgaagccatgactgaagagctttctcaatttgagagaaacaaagtatggaatttggtacctaaacatca 1856  T
Q  102 agacaaaaccatcattggaacaagatgggtgt-tcagaaataaactagatgaaaatg 157  Q
    |||| |||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  1855 agacgaaaccatcattggaacaaaatgcgtgtgtcagaaatatactggatgaaaatg 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 33679 - 33497
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  33679 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 33580  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  33579 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 33497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 24927943 - 24927761
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  24927943 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 24927844  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  24927843 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 24927761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 16902509 - 16902691
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16902509 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16902608  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16902609 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16902691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 31361382 - 31361564
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  31361382 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 31361481  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  31361482 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 31361564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 18164628 - 18164783
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18164628 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18164727  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 183  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  18164728 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 18164783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 27746777 - 27746664
Alignment:
Q  97 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||| |||| || ||||||||||||||||| || ||||| |||||||||||| | || ||  || |  ||||||| || |||||||| || ||||    
T  27746777 cctcaagaccaaacaattattggaacaagatgggtttttagaaacaaactagatgaagaaggcaaaattattcgaaacaaagccagattagtggcacaag 27746678  T
Q  197 attataatcaacaa 210  Q
      ||||||||||||    
T  27746677 gatataatcaacaa 27746664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 11378009 - 11378065
Alignment:
Q  97 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 153  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| |||||| |||||    
T  11378009 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactaaatgaa 11378065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 16269619 - 16269787
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  16269619 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 16269718  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| |||||||||||||    
T  16269719 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaag 16269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 6696781 - 6696963
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6696781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6696880  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6696881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6696963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 17155979 - 17156147
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  17155979 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 17156078  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    | || |||| ||| || || |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  17156079 gagttttcataaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 17156147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 26816491 - 26816591
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  26816491 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 26816590  T
Q  210 a 210  Q
    |    
T  26816591 a 26816591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 54695562 - 54695462
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  54695562 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 54695463  T
Q  210 a 210  Q
    |    
T  54695462 a 54695462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 27165782 - 27165576
Alignment:
Q  4 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 103  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || |||||||| |||||||| || ||| |   ||||     
T  27165782 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaatttagttccaaataatcaaa 27165683  T
Q  104 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 203  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  27165682 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 27165583  T
Q  204 tcaacaa 210  Q
    |||||||    
T  27165582 tcaacaa 27165576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 45018984 - 45019081
Alignment:
Q  99 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  45018984 tcaagacaaaaccatcattggaacaagatgggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 45019081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 9509542 - 9509360
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9509542 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9509443  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  9509442 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 9509360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 18655781 - 18655963
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18655781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18655880  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18655881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 22103158 - 22103245
Alignment:
Q  109 accatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||  || ||||  ||||||||||||||||| ||||||||||    
T  22103158 accatcattggaacaagatgggtgtttagaaataagcttgatgaagatgacaaagttgctagaaacaaggcaagattggttgctcaag 22103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 29847556 - 29847521
Alignment:
Q  118 ggaacaagatgggtgttcagaaataaactagatgaa 153  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29847556 ggaacaagatgggtgttcaaaaataaactagatgaa 29847521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 29862870 - 29862811
Alignment:
Q  118 ggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaag 177  Q
    |||| |||||||||||||||||| |||||||||||| |  |||||||  |||||||||||    
T  29862870 ggaataagatgggtgttcagaaacaaactagatgaagaaagtaaggtgatcagaaacaag 29862811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 22906787 - 22906856
Alignment:
Q  107 aaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 176  Q
    ||||||||||| ||||||||||| | || ||||| || || |||||| | ||||||||| ||||||||||    
T  22906787 aaaccatcattagaacaagatggatttttagaaacaagcttgatgaagaaggtaaggttttcagaaacaa 22906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 14119 - 14288
Alignment:
Q  27 atggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaaga 126  Q
    |||||||||||||||||  ||||| |||||||||| ||| || |||||||| |||||||| || ||| |   ||||  ||||||||||||||||||||||    
T  14119 atggattgaagccatgaaggaagaactttctcaatttgaaagaaacaaagtttggaatttagttccaaataatcaaagcaaaaccatcattggaacaaga 14218  T
Q  127 tgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  14219 tgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 40 - 131
Alignment:
Q  105 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  40 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 2509 - 2677
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  2509 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 2608  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    |||| |||||||| || || |||||| |   |||||||||||||||||| ||||| |||||||||||||    
T  2609 gggttttcagaaacaagcttgatgaagaatttaaggttgtcagaaacaaagcaaggttagttgctcaag 2677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 16137962 - 16137780
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| | |||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16137962 tggattgaggtcatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16137863  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16137862 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 6539040 - 6539222
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6539040 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6539139  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6539140 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6539222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 26354077 - 26353895
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26354077 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26353978  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26353977 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26353895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 32102943 - 32103125
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  32102943 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 32103042  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  32103043 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 32103125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 46501677 - 46501859
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  46501677 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 46501776  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  46501777 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 46501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 9541018 - 9540850
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| |||||  | || ||| |   | |||||||||||||||||||||||||||    
T  9541018 tggattgaggccatgaaggaagaactttctcagtatgaaagaaacaaagtttggaacctagttccaaataattaagacaaaaccatcattggaacaagat 9540919  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    || | |||||||| ||||| |||||| | ||||||||||||| |||||| ||||| |||||||||||||    
T  9540918 ggattttcagaaacaaacttgatgaagaaggtaaggttgtcaaaaacaaagcaaggttagttgctcaag 9540850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 5387669 - 5387511
Alignment:
Q  52 ctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatg 151  Q
    |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| |||||||||||||||||||||||||| || ||||| || || ||||    
T  5387669 ctttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatg 5387570  T
Q  152 aaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    || | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  5387569 aagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 5387511  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 8505612 - 8505794
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8505612 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8505711  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8505712 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8505794  T

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Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 44901920 - 44902102
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  44901920 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 44902019  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  44902020 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 44902102  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 18663519 - 18663616
Alignment:
Q  99 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||| ||||||||||||||||||||||||| | |||| ||| || || |||||| |  ||||||||||||||||||| ||||| || ||||||||||    
T  18663519 tcaaggcaaaaccatcattggaacaagatggtttttcaaaaacaagcttgatgaagaaagtaaggttgtcagaaacaaagcaaggttggttgctcaag 18663616  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 15179736 - 15179836
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  15179736 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 15179835  T
Q  210 a 210  Q
    |    
T  15179836 a 15179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 13756 - 13574
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  13756 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 13657  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  13656 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 13574  T

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Target: scaffold0141 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 30523 - 30614
Alignment:
Q  105 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  30523 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 30614  T

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Target: scaffold0049 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 84289 - 84198
Alignment:
Q  105 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  84289 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 84198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 19201 - 19257
Alignment:
Q  97 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 153  Q
    ||||||||  |||| || ||||||||||||||||| || ||||| ||||||||||||    
T  19201 cctcaagatcaaacaattattggaacaagatgggtctttagaaacaaactagatgaa 19257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 46124 - 46020
Alignment:
Q  106 aaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatc 205  Q
    |||||||||||||||||||||||||| |||||||| || || |||||| |||| || ||||||||||| || ||||| ||||||||||||| ||| || |    
T  46124 aaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagatggcaaagttgtcagaaataaagcaaggttagttgctcaaggttacaacc 46025  T
Q  206 aacaa 210  Q
    |||||    
T  46024 aacaa 46020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 6580 - 6489
Alignment:
Q  105 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  6580 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 6489  T

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Target: scaffold0572 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 19 - 124
Alignment:
Q  105 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataat 204  Q
    ||||||||||||||||||||||||||| ||||  || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| |||    
T  19 caaaaccatcattggaacaagatgggttttcaagaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaat 118  T
Q  205 caacaa 210  Q
    ||||||    
T  119 caacaa 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 32613 - 32516
Alignment:
Q  99 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 196  Q
    ||||| |||||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||  || ||||| |||||||||||||    
T  32613 tcaaggcaaaaccatcattggaacaagatgagttttcagaaacaaacatgatgaagaaggtaaggttgtcagaagaaaagcaaggttagttgctcaag 32516  T

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Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 153135 - 153283
Alignment:
Q  28 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 127  Q
    |||||||| |||||||  ||||| |||||||||| |||  | |||||||| |||||||| ||  || |   ||||  |||||||||||||||||||||||    
T  153135 tggattgaggccatgaaggaagaactttctcaatttgaacgaaacaaagtttggaatttagttacaaataatcaaagcaaaaccatcattggaacaagat 153234  T
Q  128 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 176  Q
    |||| || ||||| || || |||||| | ||||||||| ||||||||||    
T  153235 gggttttaagaaacaagcttgatgaagaaggtaaggttatcagaaacaa 153283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 100076 - 99976
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  100076 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 99977  T
Q  210 a 210  Q
    |    
T  99976 a 99976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 261085 - 261180
Alignment:
Q  115 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  261085 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 261180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 263388 - 263483
Alignment:
Q  115 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 210  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| ||  | ||||||||||| ||||  || |||||||||    
T  263388 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaaaccagattagttgcacaaggctacaatcaacaa 263483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 6894 - 6994
Alignment:
Q  110 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 209  Q
    |||||||||||||||||||| | || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  6894 ccatcattggaacaagatggatatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 6993  T
Q  210 a 210  Q
    |    
T  6994 a 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 167490 - 167546
Alignment:
Q  97 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 153  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| ||||||||||||    
T  167490 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactagatgaa 167546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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