View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17778_low_3 (Length: 588)
Name: NF17778_low_3
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 34 - 572
Target Start/End: Original strand, 5051458 - 5052006
Alignment:
| Q |
34 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
|
| Q |
133 |
ttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggttttcttctt---tc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5051558 |
ttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttcttcttctttc |
5051657 |
T |
|
| Q |
230 |
atttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagatta------agaagcgctttgcgatggatttgcatc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5051658 |
atttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatc |
5051757 |
T |
|
| Q |
324 |
tcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051758 |
tcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtat |
5051857 |
T |
|
| Q |
424 |
gttcacgagctattacctaccaaattttaattggataatggattttgatacttagttgaacaattatgatagccctttgcccaactgttaaattatgtat |
523 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5051858 |
gttcacgagctattacctaccaaatttaaattggataattgattctgatacttagttgaacaattatgatagccctttgcccaactgtcaaattatgtat |
5051957 |
T |
|
| Q |
524 |
tattgctgacttgattgatcccggccccaatcacgaggagaagattgag |
572 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5051958 |
tgttgctgacttgattgatcccggccccgatcacgaggagaagattgag |
5052006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 481
Target Start/End: Complemental strand, 51273938 - 51273452
Alignment:
| Q |
6 |
tggttttcttgcagagaatcaagccatttgaaaatccaacaattctcgaatataagg-atgatttat-cttgttatattgctgagtttaaggtcgaattt |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| | |||||||||||| |||||| | |||||||| |
|
|
| T |
51273938 |
tggttttcttgcagagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattt |
51273839 |
T |
|
| Q |
104 |
tcagcccagaaaactctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaag |
203 |
Q |
| |
|
|| ||| ||||||| | | |||||||| ||| ||||||||||||||| |||||| | ||| ||||| | ||| |||||| |||||||||||||||||||| |
|
|
| T |
51273838 |
tcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaag |
51273739 |
T |
|
| Q |
204 |
tgctactttt-ctggttttctt---ctttcatttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagattaa-- |
297 |
Q |
| |
|
||| | |||| ||||||||||| ||||||||||||||| |||||||| ||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
51273738 |
tgccattttttctggttttcttgttctttcatttgttggagcaaagtat---ggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaag |
51273642 |
T |
|
| Q |
298 |
----gaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgtt |
392 |
Q |
| |
|
||| ||||||| |||||||||||| |||||| |||||||||| | | |||||||||||||||| ||| ||| |||||||||||| ||||||||||| |
|
|
| T |
51273641 |
ctaagaaacgctttgagatggatttgcaactcactgctgtcttgtacgaaacacgactccatatctctatcaataaatcatctgataaattctccatgtt |
51273542 |
T |
|
| Q |
393 |
gattgtagtatatattgctaatagattg-tatgttcacgagctattacctaccaaattttaattggataatggattttgatacttagttg |
481 |
Q |
| |
|
|||| ||||||||||||||| | |||| |||||||| ||||||| | ||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
51273541 |
gattttagtatatattgctagaatattgttatgttcaagagctataagctaccaaattttaattggataatcgattctgatacttggttg |
51273452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 14907967 - 14907802
Alignment:
| Q |
6 |
tggttttcttgcagagaatcaagccatttgaaaatccaacaattctcgaatataagg-atgat-ttatcttgttatattgctgagtttaaggtcgaattt |
103 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||| || | || ||||||||||||| ||||||| |||||||||| |
|
|
| T |
14907967 |
tggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattt |
14907868 |
T |
|
| Q |
104 |
tcagcccagaaaactctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacga |
169 |
Q |
| |
|
|| || ||||||||| || ||||||||||| ||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
14907867 |
tcggcaaagaaaactcaagtaaatttggttttcaggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 14907717 - 14907599
Alignment:
| Q |
295 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
393 |
Q |
| |
|
||||| |||||||| |||||||||| | |||||| ||| ||||||| | ||||| ||||| |||| ||| ||| |||||||||||| |||||||||||| |
|
|
| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
|
| Q |
394 |
attgtagtatatattgcta |
412 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
14907617 |
atttaagtatatattgcta |
14907599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University