View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17778_low_5 (Length: 565)

Name: NF17778_low_5
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17778_low_5
NF17778_low_5
[»] chr3 (4 HSPs)
chr3 (18-263)||(10368301-10368546)
chr3 (404-501)||(10368687-10368784)
chr3 (515-550)||(10368838-10368873)
chr3 (325-353)||(10368608-10368636)
[»] chr8 (2 HSPs)
chr8 (429-497)||(11659585-11659653)
chr8 (429-497)||(11668754-11668822)
[»] chr4 (1 HSPs)
chr4 (412-467)||(53239235-53239290)
[»] chr1 (1 HSPs)
chr1 (412-467)||(2170350-2170405)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 10368301 - 10368546
Alignment:
Q  18 tcttttacatcatctgttagaataaattcacattgaaattttannnnnnngacaatcaagttttggttagcatgagcctatataaatgtcaaggctattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368301 tcttttacatcatctgttagaataaattcacattgaaattttatttttttgacaatcaagttttggttagcatgagcctatataaatgtcaaggctattt 10368400  T
Q  118 tacttttcttgagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctacgagagctttcaattcaacggattgattgattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368401 tacttttcttgagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctacgagagctttcaattcaacggattgattgattt 10368500  T
Q  218 aatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10368501 aatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 10368546  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 404 - 501
Target Start/End: Original strand, 10368687 - 10368784
Alignment:
Q  404 caacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccct 501  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368687 caacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccct 10368784  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 550
Target Start/End: Original strand, 10368838 - 10368873
Alignment:
Q  515 gcgtgtgtgtgtcttaaggaacaattgtggagtata 550  Q
    ||||||||||||||||||||||||||||||||||||    
T  10368838 gcgtgtgtgtgtcttaaggaacaattgtggagtata 10368873  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 10368608 - 10368636
Alignment:
Q  325 agaaaacaaatctgaatctttgaactcca 353  Q
    |||||||||||||||||||||||||||||    
T  10368608 agaaaacaaatctgaatctttgaactcca 10368636  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 11659585 - 11659653
Alignment:
Q  429 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac 497  Q
    |||||||||||| ||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||    
T  11659585 attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcac 11659653  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 11668754 - 11668822
Alignment:
Q  429 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac 497  Q
    |||||||||||| |||| ||||||||||| | ||||||||| |||||| ||||||||||||||||||||    
T  11668754 attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcac 11668822  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 53239235 - 53239290
Alignment:
Q  412 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 467  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  53239235 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 53239290  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 2170350 - 2170405
Alignment:
Q  412 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 467  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  2170350 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 2170405  T

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