View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17778_low_6 (Length: 399)
Name: NF17778_low_6
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 40673057 - 40672684
Alignment:
| Q |
8 |
gagatgaatatggcgatgtgactctcaagacatcaactcttcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40673057 |
gagatgaatatggcgatgtgactctcaagacatcaactattcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccact |
40672958 |
T |
|
| Q |
108 |
tcacttggccgagagcattgttcgaaggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatcttt |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672957 |
tcacttggccgagagcattgttcggaggcgccgtgaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatcttt |
40672858 |
T |
|
| Q |
208 |
gtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672857 |
gtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtg |
40672758 |
T |
|
| Q |
308 |
taacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtgtgctgttt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672757 |
taacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtgtgctgttt |
40672684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 279
Target Start/End: Complemental strand, 40683354 - 40683106
Alignment:
| Q |
28 |
actctcaagacatcaactcttcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattg |
127 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||| |||| || | | | |||| |
|
|
| T |
40683354 |
actctaaatacatcaactattcaacctttcaacggtagcatgattgagatgaagctgaaggtagactcgtgtgagcc---tcacgtgactaacaacattt |
40683258 |
T |
|
| Q |
128 |
ttcgaaggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacattt |
227 |
Q |
| |
|
||| || ||||| ||||||||||||||| |||||| |||||| |||||||||||||| ||| |||| ||||||||| ||||| ||| | ||| |
|
|
| T |
40683257 |
atcgtagccgccgagaacatggaagggttgaattcggtctcaaattgttcacttccatccagtttaagaaagatatctttgaatccaactggataacttt |
40683158 |
T |
|
| Q |
228 |
gaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaat |
279 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
40683157 |
gaaggttgtttgctacccacttagctttgttatttcgcaaaatgtctacaat |
40683106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University