View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17778_low_7 (Length: 341)
Name: NF17778_low_7
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 15304886 - 15305210
Alignment:
| Q |
17 |
acttatctgcatggtcatgatacaagctttatgaataggtattgatagcttcctggtcaacccttattactctaccccataccgttgtggaatagttgaa |
116 |
Q |
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| T |
15304886 |
acttatctgcatggtcatgatacaagctttatgaataggtattgatagcttcctagtcaacccttattactctaccccataccgttgtggaatagttgaa |
15304985 |
T |
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| Q |
117 |
aggattttcttgtgcaggaaatacattatattagcataaaattctctcataaactcgtagtgcaactttcttggtggattcactaggacattccctttcc |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15304986 |
aggattttcttgtgtaggaaatacattatattagcataaaattctctcataaactcgtagtgcaactctcttggtggattcactaggacattccctttcc |
15305085 |
T |
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| Q |
217 |
ttgatagtatcatgttggatacatgtatgcaatcacccatcgaattaaaataaaacnnnnnnnnatgcataattcttcttcttgaaagctgcacaaattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15305086 |
ttgatagtatcatgttggatacatgtatgcaatcacccatcgaattaaaataaaacttttttttatgcataattcttcttcttgaaagctgcacaaattg |
15305185 |
T |
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| Q |
317 |
ctcttgctgctcaggtcctttgaat |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
15305186 |
ctcttgctgctcaggtcctttgaat |
15305210 |
T |
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