View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17778_low_8 (Length: 307)
Name: NF17778_low_8
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 47027655 - 47027549
Alignment:
| Q |
185 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgttattttcttggcctctgcttgagat |
284 |
Q |
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| T |
47027655 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgttattttcttggcctctgcttgagat |
47027556 |
T |
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| Q |
285 |
taattag |
291 |
Q |
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||||||| |
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| T |
47027555 |
taattag |
47027549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 47027868 - 47027683
Alignment:
| Q |
7 |
gcaacacagactctctgaactctctgcgcgccaatgctgtattttccaataactcaacgacttatcaaaacagcatatacaa----tagtttct---tat |
99 |
Q |
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| T |
47027868 |
gcaatacagactctctgaactctctgagcgccaatgctgtattttccaataactcaacgacttatcaaaat----tatacaagttgtagaaacaacatat |
47027773 |
T |
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| Q |
100 |
cttgttttgaggaattaataagtgactttaatttgtatgatttcttatcttatttcaagaa----taaggaaaggtgaatcaatctttta |
185 |
Q |
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| T |
47027772 |
cttgttttgaggaattaataagtgagtttaatttgtatgatttcttatcttatttcaagaataattaaggaaaggtgaatcaatctttta |
47027683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 36582466 - 36582527
Alignment:
| Q |
196 |
tattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaat |
257 |
Q |
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| T |
36582466 |
tattacctggagctgctacctttcaattggtgaacatgagcatccattctcttaaaatcaat |
36582527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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