View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17778_low_9 (Length: 302)
Name: NF17778_low_9
Description: NF17778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17778_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 1784685 - 1784413
Alignment:
| Q |
15 |
caattagtcttgttgccggccaatgcaagttactgtatagtccaattataatgttattctcacttgataagacaatttcttctattttaacnnnnnnnnt |
114 |
Q |
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| T |
1784685 |
caattagtcttgttgccggccaatgcaagttactgtatagtccaattataatgttattctcacttgataagacaatttcttctattttaacaaaaaaaat |
1784586 |
T |
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| Q |
115 |
cattgtcatgcatttataattaaagagaaaccaaattaaaatatcctaaaaagcaatggttattataaaaatacaagagacaagatttatcattctaagg |
214 |
Q |
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| T |
1784585 |
cattgtcatgcatttataattaaagagaaaccaaattaaaatatcctaaaaagcaatggttattataaaaatacaagagacaagatttatcattctaagg |
1784486 |
T |
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| Q |
215 |
caaagattctccaaaggtgacaaatacaagcacttgtatattctcctttgatgttacctagcacaaactaatt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1784485 |
caaagattctccaaaggtgacaaatacaagcacttgtatattctcctttgatgttacctagcacaaactaatt |
1784413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 1789612 - 1789571
Alignment:
| Q |
136 |
aaagagaaaccaaattaaaatatcctaaaaagcaatggttat |
177 |
Q |
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| T |
1789612 |
aaagagaaaccaaactaaaatattctaaaaaggaatggttat |
1789571 |
T |
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