View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17779_high_3 (Length: 476)
Name: NF17779_high_3
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17779_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 12514832 - 12515066
Alignment:
| Q |
27 |
agtcaaatggaatctaaagaaggtgatgagagnnnnnnngaacacaaagtttctatgttaaagctattttcttttgctgactcttatgattatgtcttaa |
126 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12514832 |
agtcaaatggaatccaaagaaggtgatgagagaaaaaaagaacacaaagtttctatgttaaagctattttcttttgctgactcttatgattatgtcttaa |
12514931 |
T |
|
| Q |
127 |
tgtttattggatctattggagccattgttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatct |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12514932 |
tgtttattggatctattggagccattgttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatct |
12515031 |
T |
|
| Q |
227 |
tttccctaaggaagcctctcacaaagttgccaagg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12515032 |
tttccctaaggaagcctctcacaaagttgccaagg |
12515066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 335 - 427
Target Start/End: Original strand, 12515140 - 12515232
Alignment:
| Q |
335 |
gatggtctgtaatacagagttcagtcgatagtctgatcaagaattgttccattcaaaattgtttcgatttaatggaactaacaaaaatacaat |
427 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12515140 |
gatggtctttaatacagagttcagtcgatagtctgatcaaaaattgttccattcagaattgtttcgatttaatggaactaacaaaaatacaat |
12515232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 27718051 - 27718158
Alignment:
| Q |
154 |
ttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatcttttccctaaggaagcctctcacaaagt |
253 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| |||||||| || | || ||||| | || |||||||| ||||| ||||| ||||| || ||| |||| |
|
|
| T |
27718051 |
ttcatggtgcatctgttcctgttttctttatcttctttgggaaaattattaatgtcgtaggtttggcttacctttttcctaaagaagcttcccaccaagt |
27718150 |
T |
|
| Q |
254 |
tgccaagg |
261 |
Q |
| |
|
|||||||| |
|
|
| T |
27718151 |
tgccaagg |
27718158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University