View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17779_high_4 (Length: 437)
Name: NF17779_high_4
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17779_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 39479702 - 39479518
Alignment:
| Q |
9 |
acatcatcaaaaataggaatgcataagcacaagttccaagcatgttcgtacaaatgagaaacaacaggaaaggcacaaagaggagcaaacaaggagatca |
108 |
Q |
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| T |
39479702 |
acatcatcaaaaataggaatgcataagcacaagttccaagcatgttcgtacaaatgagaaacaacaagaaaggcacaaagaggagcaaacaaggagatca |
39479603 |
T |
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| Q |
109 |
tgaactcataattactaaaatgatgttgtctcacatggtcaagcaataacacatcatcttcatcttccaaacgtgaaaagtcaat |
193 |
Q |
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| T |
39479602 |
tgaactcataattactaaaatgatgttgtctcacatggtcaagcaataacacatcatcttcatcttccaaacgtgaaaagtcaat |
39479518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 37776471 - 37776414
Alignment:
| Q |
136 |
gtctcacatggtcaagcaataacacatcatcttcatcttccaaacgtgaaaagtcaat |
193 |
Q |
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| T |
37776471 |
gtcttacatggtcaagcaacagcacatcatcttcctcttccaaacgtgaaaagtcaat |
37776414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 40438739 - 40438796
Alignment:
| Q |
125 |
aaaatgatgttgtctcacatggtcaagcaataacacatcatcttcatcttccaaacgt |
182 |
Q |
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| T |
40438739 |
aaaatgatgttgtctcacatggtaaagcaacaaaacatcgtcttcatctttcaaacgt |
40438796 |
T |
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