View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17779_low_1 (Length: 657)

Name: NF17779_low_1
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17779_low_1
NF17779_low_1
[»] chr3 (15 HSPs)
chr3 (18-649)||(9336556-9337187)
chr3 (289-649)||(9329852-9330212)
chr3 (18-172)||(9330347-9330501)
chr3 (378-626)||(9395298-9395549)
chr3 (549-642)||(41980877-41980970)
chr3 (547-648)||(9756397-9756498)
chr3 (549-649)||(41985644-41985744)
chr3 (552-649)||(9494811-9494908)
chr3 (548-648)||(9695615-9695715)
chr3 (549-649)||(9343861-9343961)
chr3 (549-649)||(9407382-9407482)
chr3 (549-649)||(9448330-9448430)
chr3 (549-628)||(9485969-9486048)
chr3 (549-628)||(13864241-13864320)
chr3 (548-649)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (540-624)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (541-628)||(7025793-7025880)
chr6 (540-647)||(7041514-7041621)
chr6 (541-628)||(7029850-7029937)
chr6 (538-628)||(7012857-7012947)
chr6 (538-628)||(9170854-9170944)
chr6 (549-629)||(7046875-7046955)
chr6 (538-628)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (605-649)||(4439876-4439920)
chr1 (613-649)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (608-649)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 9337187 - 9336556
Alignment:
Q  18 ctctcaaaccttggttaatcagaatcggtcctgatgtatacggtaaacctcaactctggcatcctttctcatcaaaccaacttttatcatcagatttcaa 117  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337187 ctctcaacccttggctgatcagaatcggtcctgatgtatacggtaaacctcaactctggcatcctttctcatcaaaccaacttttatcatcagatttcaa 9337088  T
Q  118 taatgtacttgactttaacaaactctcgcttcgagttctcggttgcatgtcctacatgcacctcctgattggaggagatgcaagtttctttagcttttct 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9337087 taatgtacttgactttaacaaactctcgcttcgaattctcggttgcatgtcctacatgcacctcctgattggaggagatgcaagtttctttagcttttat 9336988  T
Q  218 gttgctgccgtgtgtcacggggaacatcgtcctgttatcgtcacgcttaaatctgacttctctctggagccgatgatgttttgttgtggggacgacagtt 317  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336987 gttgctgccgtgtgtcacagggaacatcgtcctgttatcgtcacacttaaatctgacttctctctggagccgatgatgttttgttgtggggacgacagtt 9336888  T
Q  318 ggaccatgatacccaacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336887 ggaccatgatacccaacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgat 9336788  T
Q  418 tggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagttgttgctggtggat 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9336787 tggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggtcgagagtagtgagtttgagttgttgctggtggat 9336688  T
Q  518 agatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336687 agatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttt 9336588  T
Q  618 tgttcttggggaatggatgttcgttctctgct 649  Q
    ||||||||||||||||||||||||| ||||||    
T  9336587 tgttcttggggaatggatgttcgttttctgct 9336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 289 - 649
Target Start/End: Complemental strand, 9330212 - 9329852
Alignment:
Q  289 gatgatgttttgttgtggggacgacagttggaccatgatacccaacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtg 388  Q
    |||||||||| ||||||||||||| |||||||| |  || ||||||||| ||| ||| ||||||||||||| |||||||||||||||  ||||||||||     
T  9330212 gatgatgtttcgttgtggggacgatagttggactaccatccccaacatgtcaaactcccatggaggaaatgtttgtgtttttaaagggcggccttgtgtt 9330113  T
Q  389 gtagacaaagctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgaga 488  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  9330112 gtagacaaaactggtcggactttcatgattggaccggatttaaccactcatttgatcgctgagccggtgtttggtgggaaaagtaaattcttggtcgaga 9330013  T
Q  489 gtagtgagtttgagttgttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggt 588  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9330012 gtagtgagtttgagttgttgctggtggatagatatgaaaattatcgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggt 9329913  T
Q  589 caagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 649  Q
    |||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  9329912 caagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgct 9329852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 9330501 - 9330347
Alignment:
Q  18 ctctcaaaccttggttaatcagaatcggtcctgatgtatacggtaaacctcaactctggcatcctttctcatcaaaccaacttttatcatcagatttcaa 117  Q
    ||||||| |||||||| |||||||||||||||||| |  | |||||| |||||||||||||||||||||||||    |||  |||||| |||||||||||    
T  9330501 ctctcaacccttggttgatcagaatcggtcctgatttcaaaggtaaaactcaactctggcatcctttctcatctggacaaaatttatcttcagatttcaa 9330402  T
Q  118 taatgtacttgactttaacaaactctcgcttcgagttctcggttgcatgtcctac 172  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9330401 taatgtgcttgactttaacaaactctcgtttcgagttctcggttgcatgtcctac 9330347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 378 - 626
Target Start/End: Complemental strand, 9395549 - 9395298
Alignment:
Q  378 ggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaatt 477  Q
    |||||||| ||||||||||| ||||||||||||| ||||||| | | || |||| |  |||||| || |||||||| ||| |||| ||  ||| ||||||    
T  9395549 ggccttgtatggtagacaaaactggtcggactgttatgattgaatcagacttgagctatcattttatagctgagcctgtgattggcggagaaagtaaatt 9395450  T
Q  478 cttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaattatt---gtgttcctgtatggattgatgtgtttaggcttgatgagaaa 574  Q
    |||||| |||| |||||| ||| |||||||||| ||||||| |||| ||||| ||    |||||  |||| ||||||||||||||||||||||||||||     
T  9395449 cttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatgagaag 9395350  T
Q  575 gagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgg 626  Q
     |||||| |||||| ||| |||| ||||||||||||  ||||||||||||||    
T  9395349 cagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 549 - 642
Target Start/End: Complemental strand, 41980970 - 41980877
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgtt 642  Q
    |||||||||||||||||| | |||||||||| |  ||||||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 547 - 648
Target Start/End: Complemental strand, 9756498 - 9756397
Alignment:
Q  547 gattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctct 646  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||| || |||| ||||||||| || ||| | || ||||| ||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcattctct 9756399  T
Q  647 gc 648  Q
    ||    
T  9756398 gc 9756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 41985744 - 41985644
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 648  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  649 t 649  Q
    |    
T  41985644 t 41985644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 552 - 649
Target Start/End: Original strand, 9494811 - 9494908
Alignment:
Q  552 atgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 649  Q
    ||||| |||||||||||||||| ||||  || ||||| ||  ||| || |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 648
Target Start/End: Original strand, 9695615 - 9695715
Alignment:
Q  548 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 647  Q
    |||||||| || |||||||||||||| ||||| | |||||||||| |||| |||||||| |||| ||||||||| |||||| | |  |||||||||||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctg 9695714  T
Q  648 c 648  Q
    |    
T  9695715 c 9695715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 9343961 - 9343861
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 648  Q
    |||||||||||| |||||||||||  ||||| | |||||| ||| | || | |||||| ||||  ||||||||||||||||||| ||||||||| |||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  649 t 649  Q
    |    
T  9343861 t 9343861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 9407482 - 9407382
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 648  Q
    ||||||||||||| ||||| |||||  | ||||| ||||| ||| ||| || |||||| |||| |||||||||||| | |||||||||||| || |||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  649 t 649  Q
    |    
T  9407382 t 9407382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 649
Target Start/End: Complemental strand, 9448430 - 9448330
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 648  Q
    |||||||||||| |||| ||||||| ||||| |  ||||| ||| | || | |||||| ||||  |||||||||||||||||||  |||||||| |||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  649 t 649  Q
    |    
T  9448330 t 9448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 628
Target Start/End: Original strand, 9485969 - 9486048
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    ||||||||||||||||||||||||| ||||| | ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 628
Target Start/End: Complemental strand, 13864320 - 13864241
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    ||||||||||||||||||||||||  ||||||| ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 649
Target Start/End: Original strand, 9617462 - 9617563
Alignment:
Q  548 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 647  Q
    ||||| ||||| ||| || ||||||||||||| |  ||||| ||| |||  |||||||| |||| |||||||||| | | |||||||||||| || ||||    
T  9617462 attgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctg 9617561  T
Q  648 ct 649  Q
    ||    
T  9617562 ct 9617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 624
Target Start/End: Original strand, 450102 - 450186
Alignment:
Q  540 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 624  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||   ||||||||||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 628
Target Start/End: Complemental strand, 7025880 - 7025793
Alignment:
Q  541 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 647
Target Start/End: Complemental strand, 7041621 - 7041514
Alignment:
Q  540 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttc 639  Q
    |||||||||||||| ||||||  ||| ||||||| ||||| | |||||| ||| |||| | |||||| |||| |||||||||||||||  | | ||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  640 gttctctg 647  Q
    ||||||||    
T  7041521 gttctctg 7041514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 628
Target Start/End: Complemental strand, 7029937 - 7029850
Alignment:
Q  541 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||| || |||| ||||||||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 628
Target Start/End: Complemental strand, 7012947 - 7012857
Alignment:
Q  538 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | ||||||||||| | ||||||||||||||    
T  7012947 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 628
Target Start/End: Complemental strand, 9170944 - 9170854
Alignment:
Q  538 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9170944 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 629
Target Start/End: Complemental strand, 7046955 - 7046875
Alignment:
Q  549 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggga 629  Q
    ||||| |||||| |||| ||||||| ||||| | |||||| ||| | |||| |||||| ||||| ||||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggga 7046875  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 628
Target Start/End: Original strand, 9159484 - 9159574
Alignment:
Q  538 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 628  Q
    ||||||| |||||||| |||||| |||| | ||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9159484 tcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 649
Target Start/End: Complemental strand, 4439920 - 4439876
Alignment:
Q  605 ggagataaggttttgttcttggggaatggatgttcgttctctgct 649  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  4439920 ggagatagggttttgtttttggggaatggatgttcgttttctgct 4439876  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 649
Target Start/End: Complemental strand, 18991256 - 18991220
Alignment:
Q  613 ggttttgttcttggggaatggatgttcgttctctgct 649  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18991256 ggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 649
Target Start/End: Original strand, 20694360 - 20694401
Alignment:
Q  608 gataaggttttgttcttggggaatggatgttcgttctctgct 649  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  20694360 gatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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