View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17779_low_12 (Length: 226)
Name: NF17779_low_12
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17779_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 49169795 - 49170025
Alignment:
| Q |
1 |
aatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaaactcaaatctagtattgact--n |
98 |
Q |
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| T |
49169795 |
aatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaaactcaaatctagtattgactaaa |
49169894 |
T |
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| Q |
99 |
nnnnnnnnntttaga---------tatcaagctcacatttgactttgagggcgcagaactgaagaaattcattttccgcttttaatgatcttagctcgtc |
189 |
Q |
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| T |
49169895 |
aaaaaaaaaattagatatcaaagatatcaagctcacatttgactttgagggcgcagaactgaagaaattcattttccgcttttaacgatcttagctcgtc |
49169994 |
T |
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| Q |
190 |
tcatttg-aaaactatatatgagaataatct |
219 |
Q |
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||||||| |||||||||||||| |||||||| |
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| T |
49169995 |
tcatttgaaaaactatatatgataataatct |
49170025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 49169760 - 49169818
Alignment:
| Q |
29 |
aaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaaactcaaatct |
87 |
Q |
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||||||| |||||||||||||| ||||||||||| | || ||||||||||||||||| |
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| T |
49169760 |
aaaaaagataagagatttcaaatgagttcaacttcaatagaatgattaaactcaaatct |
49169818 |
T |
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