View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17779_low_2 (Length: 590)
Name: NF17779_low_2
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17779_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 571
Target Start/End: Original strand, 12613789 - 12614349
Alignment:
| Q |
14 |
gcagagacatttgatatgttggtgtggatgcttaaacttaaaattgtccacttcttcatatttaagatgtgtcattctcgcattagattatttgatcaaa |
113 |
Q |
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| T |
12613789 |
gcagagatatttgatatgttggtgtggatgcttaaacttaaaattgtccacttcttcatatttaagttgtgtcattctcgcattagactatttgatcaaa |
12613888 |
T |
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| Q |
114 |
atataattatataaaagtattagtatctttttccaattcatttattgtttttatatgaaattattgataatactcacggtannnnnnnn---gaaagaaa |
210 |
Q |
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| T |
12613889 |
atataattatataaaagtattagtatctttttccaattcatttattgtttttatatgaaattattgataatactcacggtatttttatttttgaaagaaa |
12613988 |
T |
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| Q |
211 |
tactcacggtattttgttatcaatgaaataagtttttaaaataaaaattacttaaatttaatatcaacaaagttgcaagatagattgaatagatcgacaa |
310 |
Q |
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| T |
12613989 |
tactcacggtattttgttatcaatgaaataagtttttaaaataaaaattacttaaatttaatatcaataaagttacaagatagatggaatagatcgacaa |
12614088 |
T |
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| Q |
311 |
gccatatgatcaattgagaatgaaatgtttagaattgtttgattacaagacttcgataaacgttttcgtagaagctaaaggatttttactttggtgtatc |
410 |
Q |
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| T |
12614089 |
gccatatgatcaattgagaatgaaatgtttagaattgtttgattataagactccgataaacgttttcgtagaagctaaaggatttttactttggtgtatc |
12614188 |
T |
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| Q |
411 |
atgttttgatgataaaatagattttagagcaggtatnnnnnnnnnnnnnnnnntttcttttagtgcttgtgaaaatgtattatcatgttaacttatttat |
510 |
Q |
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| T |
12614189 |
atgttttgatgataaaatagattttagagcaggtataaaaaaaattcaaaaaatttcttttagtgcttgtgaaaatgtattatcatgttaacttatttat |
12614288 |
T |
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| Q |
511 |
tctctctatcgaaattaaaattaaaatagaaaatgttatgagaatgtaatctggccctaat |
571 |
Q |
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| T |
12614289 |
tctctctatcgaaattaaatttaaaatagaaaatgttatgagaatgtaatctggccctaat |
12614349 |
T |
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