View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17779_low_3 (Length: 535)
Name: NF17779_low_3
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17779_low_3 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Original strand, 43435969 - 43436474
Alignment:
| Q |
13 |
atgaaagctaacagtatttgggttgatatcaagacttggactatcttgatccaagggtactgtgatgccggcaaactagatgatgcgttatttagtctct |
112 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435969 |
atgaaagctaacaatatttgggttgatatcaagacttggactatcttgatccaagggtactgtgatgccggcaaactagatgatgcgttatttagtctct |
43436068 |
T |
|
| Q |
113 |
ataagatgattgaaactaaggatgcagatgctgaattgttggaagttctagttgagggttttcttaagcaaaaaagaatcgatggtgcatacaagttgct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436069 |
ataagatgattgaaactaaggatgcagatgctgaattgttggaagttctagttgagggttttcttaagcaaaaaagaatcgatggtgcatacaagttgct |
43436168 |
T |
|
| Q |
213 |
tttagagatatctactaagtgtcgtacatgtccacgtcaagttacattcaagaaactgattgatagtctattaggagtcagaaagtttgaggaggcactc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436169 |
tttagagatatctactaagtgtcgtacatgtccacgtcaagctacattcaagaaactgattgatagtctattaggagtcagaaagtttgaggaggcactc |
43436268 |
T |
|
| Q |
313 |
gacctgcttcgtttgatgaagtctaaacaataccctccataccatgaaccatttgtgtcacatatttcgaagtttgggaccatggaggatgctgcagaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436269 |
gacctgcttcgtttgatgaagtctaaacaataccctccataccatgaaccatttgtgtcacatatttcgaagtttgggaccatggaggatgctgcagaat |
43436368 |
T |
|
| Q |
413 |
tcctgagggtgttgagtttaaaaaattacccatcccatacagtttaccttcaaatttttgaatccttatttcaagaaggtagactttcagaggccaaaga |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436369 |
tcctgagggtgttgagtttaaaaaattacccatcccatacagtttaccttcaaatttttgaatccttatttcaagaaggtagactttcagaggccaaaga |
43436468 |
T |
|
| Q |
513 |
tctatt |
518 |
Q |
| |
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|||||| |
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| T |
43436469 |
tctatt |
43436474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 518
Target Start/End: Original strand, 43427480 - 43427972
Alignment:
| Q |
29 |
tttgggttgatatcaagacttggactatcttgatccaagggtactgtgatgccggcaaactagatgatgcgttatttagtctctataagatgattgaaa- |
127 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| || |||| ||||||||||| |||| |
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| T |
43427480 |
tttgggttgacatcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactagatggtgcgttacttggtctttataagatgatggaaaa |
43427579 |
T |
|
| Q |
128 |
--ctaaggatgcagatgctgaattgttggaagttctagttgagggttttcttaagcaaaaaagaatcgatggtgcatacaagttgcttttagagatatct |
225 |
Q |
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|| | |||||||||||||||||||||| || ||||| |||||| |||||||||| ||||| || | |||||||||||||||| ||||||||||| |
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| T |
43427580 |
gtcttccagtccagatgctgaattgttggaagtactggttgatggttttattaagcaaaagagaatagacgatgcatacaagttgcttctagagatatct |
43427679 |
T |
|
| Q |
226 |
actaagtgtcgtacatgtccacgtcaagttacattcaagaaactgattgatagtctattaggagtcagaaagtttgaggaggcactcgacctgcttcgtt |
325 |
Q |
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||||||| | | ||||| | |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |
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| T |
43427680 |
ggcaagtgtcatttaagtccatggcaagctacattcgagaaactgattgatagtctattaagagtcagaaagtttgaggaggcgctcgaccttcttcgtt |
43427779 |
T |
|
| Q |
326 |
tgatgaagtctaaacaataccctccataccatgaaccatttgtgtcacatatttcgaagtttgggaccatggaggatgctgcagaattcctgagggtgtt |
425 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||| | || |
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| T |
43427780 |
tgatgaagtctaaacaatgctctccataccatgaaccatttgcatcatatatttcgaagtttgggaccgtggaggatgctgtggaattcctgaaagcatt |
43427879 |
T |
|
| Q |
426 |
gagtttaaaaaattacccatcccatacagtttaccttcaaatttttgaatccttatttcaagaaggtagactttcagaggccaaagatctatt |
518 |
Q |
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|||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43427880 |
gagtataaaaaattacccatctcaaacagtttacctccaaatttttgaatccttatttcaagaaggtagactttcagaggccaaagatctatt |
43427972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 43444723 - 43444785
Alignment:
| Q |
40 |
atcaagacttggactatcttgatccaagggtactgtgatgccggcaaactagatgatgcgtta |
102 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
43444723 |
atcaagacttggaccatcttgatccaagggtactgagatgccggcaaactagacgatgcgtta |
43444785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 518
Target Start/End: Original strand, 21436 - 21937
Alignment:
| Q |
17 |
aagctaacagtatttgggttgatatcaagacttggactatcttgatccaagggtactgtgatgccggcaaactagatgatgcgttatttagtctctataa |
116 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||| ||| ||||||||| |
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| T |
21436 |
aagctaacaatatttgggttgatatcaagacttggaccatcttgatccaatggtactgtgatgcctgcaaactagacgatgcgttacttaatctctataa |
21535 |
T |
|
| Q |
117 |
gatgattgaaactaaggatgcagatgctgaattgttggaagttctagttgagggttttcttaagcaaaaaagaatcgatggtgcatacaagttgctttta |
216 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| | |||| |||||||||||||||| || |
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| T |
21536 |
gatgattgaaactaatgatgcagatgctgaattgttggaagttctggttgatggttttcttaagcaaaagagagttgatgctgcatacaagttgcttcta |
21635 |
T |
|
| Q |
217 |
gagatatctactaagtgtcgtacatgtccacgtcaagttacattcaagaaactgattgatagtctattaggagtcagaaagtttgaggaggcactcgacc |
316 |
Q |
| |
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||||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21636 |
gagatatctgccaagtgtcgtacatgtccacggcaagctacattcaagaaactgattgatagtctattaggagtcagaaagtttgaggaggcactcgacc |
21735 |
T |
|
| Q |
317 |
tgcttcgtttgatgaagtctaaacaataccctccataccatgaaccatttgtgtcacatatttcgaagtttgggaccatggaggatgctgcagaattcct |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21736 |
ttcttcgtttgatgaagtctaaacaataccctccataccatgaaccatttgtgtcacatatttcgaagtttgggaccatggaggatgctgcagaattcct |
21835 |
T |
|
| Q |
417 |
gagggtgttgagtttaaaaaattacccatcccatacagtttaccttcaaatttttgaatccttatttcaagaaggtagactttcagaggccaaagatcta |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21836 |
gagggtgttgagtttaaaaaattacccatcccatacagtttaccttcaaattttttaatccttatttcaagaaggtagactttcagaggccaaagatcta |
21935 |
T |
|
| Q |
517 |
tt |
518 |
Q |
| |
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|| |
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|
| T |
21936 |
tt |
21937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 510
Target Start/End: Complemental strand, 40185551 - 40185311
Alignment:
| Q |
255 |
tacattcaagaaactgattgatagtctattaggagtcagaaagtttgaggaggcactcgacctgcttcgtttgatgaagtctaaacaataccctccatac |
354 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | ||| || | |
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|
| T |
40185551 |
tacattcaagaaactgattgaaagtctattaggagtcagaaagttcgaggaggcacttgaccttcttcgtttgcggtggtc---------------atcc |
40185467 |
T |
|
| Q |
355 |
catgaaccatttgtgtcacatatttcgaagtttgggaccatggaggatgctgcagaattcctgagggtgttgagtttaaaaaattacccatcccatacag |
454 |
Q |
| |
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| | || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||| || || ||||| || |||| || |
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| T |
40185466 |
cttaaatcatttgtgtagtatatttcgaagtttgggaccatggaggatgctgcaaaattcctgaaagttttgagtaagaataactacccttctcataaag |
40185367 |
T |
|
| Q |
455 |
tttaccttcaaatttttgaatccttatttcaagaaggtagactttcagaggccaaa |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40185366 |
tttaccttcaaatttttgaatccttatttcaagaaggcagactttcagaggccaaa |
40185311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 40185777 - 40185737
Alignment:
| Q |
40 |
atcaagacttggactatcttgatccaagggtactgtgatgc |
80 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
40185777 |
atcaagacttggaagatcttgatcaaagggtactgtgatgc |
40185737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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