View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17779_low_6 (Length: 331)

Name: NF17779_low_6
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17779_low_6
NF17779_low_6
[»] chr8 (5 HSPs)
chr8 (1-314)||(12230026-12230323)
chr8 (88-165)||(12235975-12236052)
chr8 (88-165)||(12239464-12239541)
chr8 (206-280)||(24732606-24732680)
chr8 (206-255)||(13403550-13403599)
[»] chr1 (6 HSPs)
chr1 (196-315)||(13133000-13133119)
chr1 (206-282)||(50092021-50092097)
chr1 (206-280)||(6333231-6333305)
chr1 (196-256)||(22174723-22174783)
chr1 (222-292)||(6632523-6632593)
chr1 (196-254)||(51169539-51169597)
[»] chr2 (13 HSPs)
chr2 (245-314)||(34358721-34358790)
chr2 (206-280)||(1222430-1222504)
chr2 (215-277)||(23289822-23289884)
chr2 (234-279)||(2176962-2177007)
chr2 (4-49)||(13538437-13538482)
chr2 (207-279)||(32170791-32170863)
chr2 (203-254)||(79237-79288)
chr2 (207-290)||(30255721-30255804)
chr2 (225-279)||(14163878-14163932)
chr2 (207-280)||(1398180-1398253)
chr2 (234-279)||(17930592-17930637)
chr2 (207-255)||(3153871-3153919)
chr2 (206-282)||(20680261-20680337)
[»] chr4 (8 HSPs)
chr4 (196-292)||(10462603-10462699)
chr4 (196-280)||(19310193-19310277)
chr4 (225-289)||(5592464-5592528)
chr4 (225-289)||(48125842-48125906)
chr4 (206-280)||(13840676-13840751)
chr4 (206-280)||(43470406-43470480)
chr4 (4-53)||(19597166-19597215)
chr4 (236-292)||(25241862-25241918)
[»] chr3 (6 HSPs)
chr3 (207-292)||(8845755-8845840)
chr3 (206-292)||(14609006-14609094)
chr3 (4-49)||(46547800-46547845)
chr3 (196-248)||(1699232-1699284)
chr3 (206-255)||(19229753-19229802)
chr3 (215-279)||(26376776-26376840)
[»] chr6 (4 HSPs)
chr6 (207-280)||(31933717-31933790)
chr6 (206-254)||(3490476-3490524)
chr6 (206-280)||(19617421-19617495)
chr6 (206-255)||(1309293-1309342)
[»] chr5 (2 HSPs)
chr5 (215-279)||(20974329-20974393)
chr5 (207-280)||(38707041-38707114)
[»] chr7 (1 HSPs)
chr7 (207-255)||(34205789-34205837)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 12230026 - 12230323
Alignment:
Q  1 gtgaaataattcaatttccaaagccttgaatacataaattttcataaaatgtttataaatcatttttgttaatagnnnnnnncttttatcagttttacaa 100  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||       ||||||||||||||||||    
T  12230026 gtgaaatagttcaatttccaaggccttgaatacataatttttcataaaaagtttacaaatcatttttgttaatagtttttttcttttatcagttttacaa 12230125  T
Q  101 tttaaacatgatcaaactcaacactaaatattgaggtaagagataaaatatatacaaaaggatgagttgttcgggacaactcaagnnnnnnnnncttgaa 200  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||| ||    
T  12230126 ----------------ctcaacactaaatattgaggtaagagataaaatatatacaaaaggatgagttgttcggaacaactcaagtttttttttcttaaa 12230209  T
Q  201 cgagacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatccttctgaatca 300  Q
    | |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12230210 caagacaaaatgagatatattaacaaaaaattctgctccctataacaaggaatgcaaagagaagcagaacaaaattacaacaatcaatccttctgaatca 12230309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 12235975 - 12236052
Alignment:
Q  88 atcagttttacaatttaaacatgatcaaactcaacactaaatattgaggtaagagataaaatatatacaaaaggatga 165  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||    
T  12235975 atcagtattgcaatttaaacatgatcaaactcaacactaaatattaaggtaagagataaaatatgtatcaaaggatga 12236052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 12239464 - 12239541
Alignment:
Q  88 atcagttttacaatttaaacatgatcaaactcaacactaaatattgaggtaagagataaaatatatacaaaaggatga 165  Q
    |||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||  |||||||||    
T  12239464 atcagtattgcaatttaaacatgatcaaaatcaacactaaatattaaggtaagagataaaatatgtatcaaaggatga 12239541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 24732606 - 24732680
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||||||||||||||||||||| || || ||||||| ||||||||||  || |||  || |||||||||||||    
T  24732606 caaaatgagatatattaacaaaaagttttgatccctagcacaaggagtgtcaaaagagacaaaacaaaattacaa 24732680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 13403550 - 13403599
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgc 255  Q
    |||||||||||||||||||||| | || || ||||||| |||||||||||    
T  13403550 caaaatgagatatattaacaaagagttttgttccctagcacaaggagtgc 13403599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 13133000 - 13133119
Alignment:
Q  196 ttgaacgagacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatccttctg 295  Q
    |||||| || |||||| ||||||||||| ||| |||| |||||||||  || |  |||||| | |||||||||| |||||||||||||||||||||| ||    
T  13133000 ttgaacaagtcaaaataagatatattaataaataattttgctccctaacactaaaagtgcacaaagaagcagaataaaattacaacaatcaatccttatg 13133099  T
Q  296 aatcaaaatagtggtaaact 315  Q
    ||||||||||||||||||||    
T  13133100 aatcaaaatagtggtaaact 13133119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 50092021 - 50092097
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaaca 282  Q
    |||||||||||||||||||||| |||| |||||||||  | |||||||||  | ||||| |||||||||||||||||    
T  50092021 caaaatgagatatattaacaaataattctgctccctaacaaaaggagtgcgtaaagaaggagaacaaaattacaaca 50092097  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 6333305 - 6333231
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||||||||||||||||||||| || || ||||||| ||||||||||| || |||  || |||||||||||||    
T  6333305 caaaatgagatatattaacaaaaagttttgatccctagcacaaggagtgccaaaagagacaaaacaaaattacaa 6333231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 22174723 - 22174783
Alignment:
Q  196 ttgaacgagacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgca 256  Q
    |||||| || |||||||||||||||||||||||| || || ||||||| ||||||||||||    
T  22174723 ttgaacaagccaaaatgagatatattaacaaaaagttttggtccctagcacaaggagtgca 22174783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 6632523 - 6632593
Alignment:
Q  222 aacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatcctt 292  Q
    ||||||||||| | || ||||| | ||||||| |||| ||||||||||||| |||||||||| ||||||||    
T  6632523 aacaaaaaattctacttcctaggataaggagtacaaaaagaagcagaacaatattacaacaaccaatcctt 6632593  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 51169539 - 51169597
Alignment:
Q  196 ttgaacgagacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtg 254  Q
    |||||| || |||||||||||||||||||||||| || || ||||||| ||||||||||    
T  51169539 ttgaacaagtcaaaatgagatatattaacaaaaagttttggtccctagcacaaggagtg 51169597  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 34358721 - 34358790
Alignment:
Q  245 acaaggagtgcaaagagaagcagaacaaaattacaacaatcaatccttctgaatcaaaatagtggtaaac 314  Q
    |||||||||||| | | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  34358721 acaaggagtgcataaaaaagcaaaacaaaattacaacaatcaatccttatgaatcaaaatagtggtaaac 34358790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 1222430 - 1222504
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||||||||||||||||||||  || || ||||||| ||||||||||| || |||  || |||||||||||||    
T  1222430 caaaatgagatatattaacaaaacgttttgatccctagcacaaggagtgccaaaagagacaaaacaaaattacaa 1222504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 23289822 - 23289884
Alignment:
Q  215 atatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaatta 277  Q
    |||||||||||||| ||||||||| |||| ||||||||||  || | ||||||||||||||||    
T  23289822 atatattaacaaaagattatgctctctagcacaaggagtgtcaaaacaagcagaacaaaatta 23289884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 2176962 - 2177007
Alignment:
Q  234 tgctccctagaacaaggagtgcaaagagaagcagaacaaaattaca 279  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||    
T  2176962 tgctccatagcacaaggagtgcaaagagaagcaaaacaaaattaca 2177007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 13538437 - 13538482
Alignment:
Q  4 aaataattcaatttccaaagccttgaatacataaattttcataaaa 49  Q
    |||||||||||||||||| || |||||||||||| |||||||||||    
T  13538437 aaataattcaatttccaatgcattgaatacataacttttcataaaa 13538482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 32170791 - 32170863
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattaca 279  Q
    |||||| |||||||||||||| || | || || |||| |||||||||||  | ||||||||||||||||||||    
T  32170791 aaaatgggatatattaacaaacaaatttgttctctagcacaaggagtgctgaaagaagcagaacaaaattaca 32170863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 79237 - 79288
Alignment:
Q  203 agacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtg 254  Q
    ||||||||||||||||||||||||| | || || ||||||| ||||||||||    
T  79237 agacaaaatgagatatattaacaaagagttttgttccctagcacaaggagtg 79288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 30255804 - 30255721
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatcc 290  Q
    |||||||||||||| ||||||| | ||| |||||||| ||||| ||||| || ||||||| || ||| |||||  |||||||||    
T  30255804 aaaatgagatatataaacaaaacaatatactccctagcacaagaagtgccaaaagaagcacaagaaagttacagaaatcaatcc 30255721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 14163878 - 14163932
Alignment:
Q  225 aaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattaca 279  Q
    ||||| || |||||||||| |||| ||||||||||||||||| |||||| |||||    
T  14163878 aaaaagttttgctccctagcacaatgagtgcaaagagaagcaaaacaaagttaca 14163932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 1398253 - 1398180
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    ||||||||||||||||||||||  || || ||||||| ||||||||||| ||  ||| || ||||| |||||||    
T  1398253 aaaatgagatatattaacaaaatgttttggtccctagcacaaggagtgccaaaggaaacaaaacaagattacaa 1398180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 17930592 - 17930637
Alignment:
Q  234 tgctccctagaacaaggagtgcaaagagaagcagaacaaaattaca 279  Q
    ||||| |||| |||||||||||||| |||||| |||||||||||||    
T  17930592 tgctctctagcacaaggagtgcaaaaagaagcggaacaaaattaca 17930637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 3153919 - 3153871
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgc 255  Q
    ||||||||||||||||||||| | || || ||||||| |||||||||||    
T  3153919 aaaatgagatatattaacaaagagttttgttccctagcacaaggagtgc 3153871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 20680261 - 20680337
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaaca 282  Q
    |||||||||||||| ||||||| | | ||||||||||  |||| |||||     |||||||||||||||||||||||    
T  20680261 caaaatgagatatactaacaaacagtcatgctccctaacacaaagagtgtcttaagaagcagaacaaaattacaaca 20680337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 10462699 - 10462603
Alignment:
Q  196 ttgaacgagacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatcctt 292  Q
    |||||| || |||||||| |||| ||||||||||||| |||||||||  |||||||||||| ||||||||||||||||  | ||||||||| |||||    
T  10462699 ttgaacaaggcaaaatgatatatgttaacaaaaaattctgctccctatcacaaggagtgcatagagaagcagaacaaagatccaacaatcagtcctt 10462603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 19310277 - 19310193
Alignment:
Q  196 ttgaacgagacaaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||| | ||||||||||||||||||||||||  || || ||||||| ||||||||||| || |||  || |||||||||||||    
T  19310277 ttgaacaaaacaaaatgagatatattaacaaaacgttttgatccctagcacaaggagtgccaaaagagacaaaacaaaattacaa 19310193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 5592528 - 5592464
Alignment:
Q  225 aaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatc 289  Q
    ||||||||||||||||||| ||||| |||||  | |||||||||||||| ||| ||||| |||||    
T  5592528 aaaaaattatgctccctagcacaagtagtgcgtaaagaagcagaacaaagttataacaagcaatc 5592464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 48125842 - 48125906
Alignment:
Q  225 aaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatc 289  Q
    ||||||||||||||||||| ||||| |||||  | |||||||||||||| ||| ||||| |||||    
T  48125842 aaaaaattatgctccctagcacaagtagtgcgtaaagaagcagaacaaagttataacaagcaatc 48125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 13840676 - 13840751
Alignment:
Q  206 caaaatgagatatattaaca-aaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||| ||||||||||||| ||||||| |||||||||| ||||||||| |    |||||||||||||| ||||||    
T  13840676 caaaataagatatattaacacaaaaattctgctccctagtacaaggagtccctttagaagcagaacaaagttacaa 13840751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 43470480 - 43470406
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||||||||||||||||||||| || || ||||||  ||||| ||||| ||  ||| || |||||||||||||    
T  43470480 caaaatgagatatattaacaaaaagttttgatccctaacacaagtagtgctaaaggaaacaaaacaaaattacaa 43470406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 19597215 - 19597166
Alignment:
Q  4 aaataattcaatttccaaagccttgaatacataaattttcataaaatgtt 53  Q
    ||||| ||||||||| || || ||||||||||||||||| ||||||||||    
T  19597215 aaatagttcaatttctaatgcattgaatacataaatttttataaaatgtt 19597166  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 25241862 - 25241918
Alignment:
Q  236 ctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatcctt 292  Q
    |||||||| |||||||||||    |||||||||||||||||||||||  ||||||||    
T  25241862 ctccctagcacaaggagtgctttaagaagcagaacaaaattacaacatccaatcctt 25241918  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 8845840 - 8845755
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatcctt 292  Q
    ||||||| |||||||||||||||| | |||||| ||| |||||||||| | || ||| |||||||||||||||| || ||||||||    
T  8845840 aaaatgatatatattaacaaaaaaatctgctccttagcacaaggagtgtatagcgaatcagaacaaaattacaaaaaccaatcctt 8845755  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 14609094 - 14609006
Alignment:
Q  206 caaaatgagatatattaacaaaaaattat--gctccctagaacaaggagtgcaaagagaagcagaacaaaattacaacaatcaatcctt 292  Q
    |||||||||||||||||||||||||  ||  ||||| ||| |||||||| ||| | ||||||||||||||||||||||| ||| |||||    
T  14609094 caaaatgagatatattaacaaaaaaaaatctgctccatagcacaaggagggcataaagaagcagaacaaaattacaacattcagtcctt 14609006  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 46547845 - 46547800
Alignment:
Q  4 aaataattcaatttccaaagccttgaatacataaattttcataaaa 49  Q
    |||||||||||||||||| || |||||||||||| |||||||||||    
T  46547845 aaataattcaatttccaatgcattgaatacataatttttcataaaa 46547800  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 1699232 - 1699284
Alignment:
Q  196 ttgaacgagacaaaatgagatatattaacaaaaaattatgctccctagaacaa 248  Q
    |||||| ||||| |||||||||||||||||| ||||| |||||||||| ||||    
T  1699232 ttgaacaagacataatgagatatattaacaagaaattctgctccctagcacaa 1699284  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 19229753 - 19229802
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgc 255  Q
    |||||||||||||||||||||| | || || ||||||| |||||||||||    
T  19229753 caaaatgagatatattaacaaagagttttgttccctagcacaaggagtgc 19229802  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 26376840 - 26376776
Alignment:
Q  215 atatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattaca 279  Q
    |||||||||||||| ||| ||||| |||| ||||||||||| || | ||| |||| |||||||||    
T  26376840 atatattaacaaaagattctgctctctagcacaaggagtgccaaaacaagtagaataaaattaca 26376776  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 31933717 - 31933790
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    ||||||||||||||||||||||| || || ||||||| | ||||||||| || |||  || |||||||||||||    
T  31933717 aaaatgagatatattaacaaaaagttttgatccctagcataaggagtgccaaaagagacaaaacaaaattacaa 31933790  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 3490524 - 3490476
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtg 254  Q
    |||||||||||||||||||||||| || || ||||||| ||||||||||    
T  3490524 caaaatgagatatattaacaaaaagttttgatccctagcacaaggagtg 3490476  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 19617495 - 19617421
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||||||||||||||||||||| |  |||| ||||| |||||  || |  | |||||||||||||||||||||    
T  19617495 caaaatgagatatattaacaaaaagtcctgcttcctagcacaagatgtacctatagaagcagaacaaaattacaa 19617421  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 1309342 - 1309293
Alignment:
Q  206 caaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgc 255  Q
    |||||||||||||||||||||| | || || ||||||| |||||||||||    
T  1309342 caaaatgagatatattaacaaagagttttgttccctagcacaaggagtgc 1309293  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 20974393 - 20974329
Alignment:
Q  215 atatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattaca 279  Q
    |||||| |||||||| || ||||||||||  |||||||||||   ||||||||||||||||||||    
T  20974393 atatataaacaaaaacttctgctccctagcgcaaggagtgcattaagaagcagaacaaaattaca 20974329  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 38707041 - 38707114
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgcaaagagaagcagaacaaaattacaa 280  Q
    |||||||||||||||||||||||    |||| ||||| |||| |||| |||||||||| ||| || ||||||||    
T  38707041 aaaatgagatatattaacaaaaacagttgcttcctagcacaaagagtacaaagagaagtagagcataattacaa 38707114  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 34205789 - 34205837
Alignment:
Q  207 aaaatgagatatattaacaaaaaattatgctccctagaacaaggagtgc 255  Q
    ||||||||||||||||||||| | || || ||||||| |||||||||||    
T  34205789 aaaatgagatatattaacaaagagttttgttccctagcacaaggagtgc 34205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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