View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17779_low_9 (Length: 272)
Name: NF17779_low_9
Description: NF17779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17779_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 6810369 - 6810604
Alignment:
| Q |
20 |
tgatacttttctcaagtgtattaaatcgttccctaaagagacatcttatatgaatgtggttacatatgaatgtataggtatatccaaactcttggacagc |
119 |
Q |
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| T |
6810369 |
tgatacttttctcaagtgtattaaatcgttccctaaagagacatcttatatgaatgtggttacatatgaatgtataggtatatccaaactcttggacagc |
6810468 |
T |
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| Q |
120 |
aacaatggtgtcattggataaccaaggtatgtggaatttgagatcagccatatgggaaagacaatatcttggacaacagttgtatctaagagtgtggaat |
219 |
Q |
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| T |
6810469 |
aacaatggtgtcattggataaccaaggtatgtggaatttgagatcagccatatgggaaagacaatatcttggacaacagttgtatctaagagtgtggaat |
6810568 |
T |
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| Q |
220 |
gcacaacgtactgcagccaatgaatatgacattcct |
255 |
Q |
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| T |
6810569 |
gcacaacgtactgcagccaatgaatatgacattcct |
6810604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 6799375 - 6799546
Alignment:
| Q |
84 |
tatgaatgtataggtatatccaaactcttggacagcaacaatggtgtcattggataaccaaggtatgtggaatttgagatcagccatatgggaaagacaa |
183 |
Q |
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| T |
6799375 |
tatgaatgtgtaggtgtatccaaactcgtggacagcaatattggtatcattggataaccaaggtatgtggaatttgagatcagccatatgggaaagacaa |
6799474 |
T |
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| Q |
184 |
tatcttggacaacagttgtatctaagagtgtggaatgcacaacgtactgcagccaatgaatatgacattcct |
255 |
Q |
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| T |
6799475 |
tatcttggacaacagttgtatctaagagtgtggaatgcacaacgtactgcagccaatgaatatgacattcct |
6799546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 6818376 - 6818455
Alignment:
| Q |
102 |
tccaaactcttggacagcaacaatggtgtcattggataaccaaggtatgtggaatttgagatcagccatatgggaaagaca |
182 |
Q |
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| T |
6818376 |
tccaaactcgtggacagcaacattggagtcattgaataatcaa-gtatgtagaacttcaggtcaaccatatggaaaagaca |
6818455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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