View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1777_high_13 (Length: 430)
Name: NF1777_high_13
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_13 |
 | |
|
| [»] scaffold0400 (3 HSPs) |
| | |
|
| [»] scaffold0365 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0400 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 5197 - 5617
Alignment:
| Q |
6 |
acatcatcacatgccacaacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctctt |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5197 |
acatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctctt |
5296 |
T |
|
| Q |
106 |
catggattggtagcaatccttgtag---ttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaa |
202 |
Q |
| |
|
||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
5297 |
catggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaa |
5396 |
T |
|
| Q |
203 |
aggtatgcttcaaagtctcaatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattgga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5397 |
aggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttcctcaccatattggg |
5496 |
T |
|
| Q |
303 |
gtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtagcattcccaatgaagttggtaagctcaattcccttaccacaatccaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5497 |
gtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattcccagtgaagttggaaagctcaattcccttaccacaatccaat |
5596 |
T |
|
| Q |
403 |
tgtcaggaaacaacctctctg |
423 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5597 |
tgtcaggaaacaacctctctg |
5617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 49 - 365
Target Start/End: Original strand, 10739 - 11055
Alignment:
| Q |
49 |
atgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaatccttgtagttgggaaggaatcacatg |
148 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| || | | |||||||||||||||||||||||| || ||||| | ||||| ||||||||||| |
|
|
| T |
10739 |
atgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggattggtaataagccttgcaattgggtgggaatcacatg |
10838 |
T |
|
| Q |
149 |
ttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccac |
248 |
Q |
| |
|
| || | |||||||| |||| |||| || |||| | | |||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10839 |
tgatggcaagtcaaaatctatctacaagatacatcttgcaagtattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccat |
10938 |
T |
|
| Q |
249 |
atcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaactcttgatttatcacttaatagactct |
348 |
Q |
| |
|
| ||||||||||| |||||| || |||| ||||||||||| || |||||||| || ||||| ||||| |||||||||||||| ||||| ||| ||||| |
|
|
| T |
10939 |
agcttagttttaagaaacaactcattctttggagttgttccacatcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactct |
11038 |
T |
|
| Q |
349 |
ctggtagcattcccaat |
365 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
11039 |
ctggtagcgttcccaat |
11055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 11400 - 11471
Alignment:
| Q |
350 |
tggtagcattcccaatgaagttggtaagctcaattcccttaccacaatccaattgtcaggaaacaacctctc |
421 |
Q |
| |
|
|||||||||||| ||||||||||| || || |||||||| |||||||||| |||| || ||||||||||| |
|
|
| T |
11400 |
tggtagcattccgaatgaagttggaaaactttattccctttccacaatccagttgttagacaacaacctctc |
11471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 5841 - 6261
Alignment:
| Q |
6 |
acatcatcacatgccacaacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctctt |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5841 |
acatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctctt |
5940 |
T |
|
| Q |
106 |
catggattggtagcaatccttgtag---ttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaa |
202 |
Q |
| |
|
||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
5941 |
catggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaa |
6040 |
T |
|
| Q |
203 |
aggtatgcttcaaagtctcaatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattgga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6041 |
aggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttcctcaccatattggg |
6140 |
T |
|
| Q |
303 |
gtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtagcattcccaatgaagttggtaagctcaattcccttaccacaatccaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6141 |
gtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattcccagtgaagttggaaagctcaattcccttaccacaatccaat |
6240 |
T |
|
| Q |
403 |
tgtcaggaaacaacctctctg |
423 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6241 |
tgtcaggaaacaacctctctg |
6261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 49 - 365
Target Start/End: Original strand, 11382 - 11698
Alignment:
| Q |
49 |
atgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaatccttgtagttgggaaggaatcacatg |
148 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| || | | |||||||||||||||||||||||| || ||||| | ||||| ||||||||||| |
|
|
| T |
11382 |
atgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggattggtaataagccttgcaattgggtgggaatcacatg |
11481 |
T |
|
| Q |
149 |
ttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccac |
248 |
Q |
| |
|
| || | |||||||| |||| |||| || |||| | | |||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
11482 |
tgatggcaagtcaaaatctatctacaagatacatcttgcaagtattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccat |
11581 |
T |
|
| Q |
249 |
atcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaactcttgatttatcacttaatagactct |
348 |
Q |
| |
|
| ||||||||||| |||||| || |||| ||||||||||| || |||||||| || ||||| ||||| |||||||||||||| ||||| ||| ||||| |
|
|
| T |
11582 |
agcttagttttaagaaacaactcattctttggagttgttccacatcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactct |
11681 |
T |
|
| Q |
349 |
ctggtagcattcccaat |
365 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
11682 |
ctggtagcgttcccaat |
11698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 12043 - 12114
Alignment:
| Q |
350 |
tggtagcattcccaatgaagttggtaagctcaattcccttaccacaatccaattgtcaggaaacaacctctc |
421 |
Q |
| |
|
|||||||||||| ||||||||||| || || |||||||| |||||||||| |||| || ||||||||||| |
|
|
| T |
12043 |
tggtagcattccgaatgaagttggaaaactttattccctttccacaatccagttgttagacaacaacctctc |
12114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 14501915 - 14502257
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
|||||| ||||||||| || || | |||||||| |||||||||||||||||| |||||||| | |||||||||||||| |||||||||| ||||| || |
|
|
| T |
14501915 |
caacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacaacagtagggcattgctttcttcatggaatggtaataa |
14502014 |
T |
|
| Q |
122 |
tccttgtagttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||| |||| |||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
14502015 |
tccttgtagttgggaaggaatcacatgtgataatgattcaaaatccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctc |
14502114 |
T |
|
| Q |
222 |
aatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaa |
321 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||||||||||||||| || ||||| |||| |||||| ||||||||||||||||||||||| || || | |
|
|
| T |
14502115 |
aatttatcatcacttccaaaaatccgcaccttagttttaaaaaacaactcattctatggagctgttccacaccatattggagtgatgtcaaacctagaca |
14502214 |
T |
|
| Q |
322 |
ctcttgatttatcacttaatagactctctggtagcattcccaa |
364 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
14502215 |
ctcttgatttgtcactaaataatctctctggtaacattcccaa |
14502257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 15035238 - 15035584
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| || |
|
|
| T |
15035238 |
caacaaaaatcaaaggcagtgaggcagatgctctgttgaagtggaaagcaagccttgacaaccacaacagggcattgctctcttcatggattggtaataa |
15035337 |
T |
|
| Q |
122 |
tccttgtag---ttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagt |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| | |
|
|
| T |
15035338 |
tccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaact |
15035437 |
T |
|
| Q |
219 |
ctcaatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctgg |
318 |
Q |
| |
|
|||||||||||||||||||| ||| | | | |||||||||| | ||| ||||||||||| || ||||| ||||||||||| || ||||| ||||| | |
|
|
| T |
15035438 |
ctcaatttctcatcacttccgaaattgaaaagtttagttttaagcagcaactccttctacggtgtagttccacaccatattggtgtaatgtccaatctag |
15035537 |
T |
|
| Q |
319 |
aaactcttgatttatcacttaatagactctctggtagcattcccaat |
365 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||| |||||||||| |
|
|
| T |
15035538 |
aaactcttgatttgtcactaaatgaactctctggtaccattcccaat |
15035584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 15023482 - 15023791
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
15023482 |
caacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaaacaagccttgacaaccatagcagggcatttctctcttcatggattggtaataa |
15023581 |
T |
|
| Q |
122 |
tccttgtagttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctc |
221 |
Q |
| |
|
||||||| |||||||||||||||| ||| | |||| || || |||||| |||| ||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
15023582 |
tccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggattaaacggtactcttcaaagtctc |
15023681 |
T |
|
| Q |
222 |
aatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaa |
321 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||| |||||| ||||| || |||||| |||| ||||||||||||| |||||| | |||| ||| |
|
|
| T |
15023682 |
aatttctcatcacttccgaaaatacacaccttagttttaacaaacaactccttgtatggagttattccacaccatattggagagatgtctagtctgaaaa |
15023781 |
T |
|
| Q |
322 |
ctcttgattt |
331 |
Q |
| |
|
||||| |||| |
|
|
| T |
15023782 |
ctcttaattt |
15023791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 15009365 - 15009674
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
15009365 |
caacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcagggcatttctctcttcatggattggtaataa |
15009464 |
T |
|
| Q |
122 |
tccttgtagttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctc |
221 |
Q |
| |
|
||||||| |||||||||||||||| ||| | |||| || || |||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
15009465 |
tccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctc |
15009564 |
T |
|
| Q |
222 |
aatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaa |
321 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| |||||| | ||| |||||||||||||| ||||| ||||||| |||||| | ||| ||| |
|
|
| T |
15009565 |
aacttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccaaattggagagatgtctagtctcaaaa |
15009664 |
T |
|
| Q |
322 |
ctcttgattt |
331 |
Q |
| |
|
||||| |||| |
|
|
| T |
15009665 |
ctcttaattt |
15009674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 15030463 - 15030772
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
15030463 |
caacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcagggcatttctctcttcatggattggtaataa |
15030562 |
T |
|
| Q |
122 |
tccttgtagttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctc |
221 |
Q |
| |
|
||||||| |||||||||||||||| ||| | |||| || || |||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
15030563 |
tccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctc |
15030662 |
T |
|
| Q |
222 |
aatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaa |
321 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| |||||| | ||| |||||||||||||| ||||| ||||||| |||||| | ||| ||| |
|
|
| T |
15030663 |
aacttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccaaattggagagatgtctagtctcaaaa |
15030762 |
T |
|
| Q |
322 |
ctcttgattt |
331 |
Q |
| |
|
||||| |||| |
|
|
| T |
15030763 |
ctcttaattt |
15030772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 48 - 365
Target Start/End: Complemental strand, 14534829 - 14534509
Alignment:
| Q |
48 |
gatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaatccttgtagt---tgggaaggaatca |
144 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||| | || |||||||||||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
14534829 |
gatgctctgttgaagtggaaagcaagccttgacaaccatagcaatgctttgctctcttcatggattggcaataatccttgtagtagttgggaaggaatca |
14534730 |
T |
|
| Q |
145 |
catgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaat |
244 |
Q |
| |
|
| ||| | || | ||||| |||||| |||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14534729 |
cgtgtgattataaatcaaagtccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttctcatcacttacaaaaat |
14534630 |
T |
|
| Q |
245 |
ccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaactcttgatttatcacttaataga |
344 |
Q |
| |
|
||||| |||||||||| |||||| | ||| |||||||||||||| ||||||||||||| |||||| | ||| ||||||||||||| ||| |||| | |
|
|
| T |
14534629 |
ccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttgtcagttaacaat |
14534530 |
T |
|
| Q |
345 |
ctctctggtagcattcccaat |
365 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
14534529 |
ctctctggtaccattcccaat |
14534509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 26 - 331
Target Start/End: Original strand, 15000763 - 15001071
Alignment:
| Q |
26 |
aaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaatcct |
125 |
Q |
| |
|
||||| |||||| ||||| || |||||||| ||||| ||||| |||||| |||||||||| || |||||||||||||||||||||||||| | |||||| |
|
|
| T |
15000763 |
aaaaaaccaaggtagtgaggttgatgctctgttgaaatggaaggcaagccttgacaaccacagcagggcattgctctcttcatggattggcaataatcct |
15000862 |
T |
|
| Q |
126 |
tgtag---ttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctca |
222 |
Q |
| |
|
||||| ||||||||||||||| ||| | || | |||||||||||| || | ||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
15000863 |
tgtagtagttgggaaggaatcacgtgtgattatcaatcaaaatccatcaacatgataaatctcaccaatattggactaaaaggtacgcttcaaactctca |
15000962 |
T |
|
| Q |
223 |
atttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaac |
322 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |||||| | ||| ||||||||||||| ||||||||||||| |||||| | ||| |||| |
|
|
| T |
15000963 |
atttctcatcacttacaaaaatccacaccttagttttaacaaacaacttcttgcacggagttgttccacaccatattggagagatgtctagtctaaaaac |
15001062 |
T |
|
| Q |
323 |
tcttgattt |
331 |
Q |
| |
|
||||||||| |
|
|
| T |
15001063 |
tcttgattt |
15001071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 15015765 - 15016077
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
||||||||||| ||||| |||| | ||| |||| ||||||||||||| ||||||||||||||| || | ||||| ||||||||||||||||||| || |
|
|
| T |
15015765 |
caacaaaaatcaaaggccgtgaggcagagtctctgttgaagtggaaagaaagctttgacaaccaaagcaaagcattactctcttcatggattggtaataa |
15015864 |
T |
|
| Q |
122 |
tccttgtagt---tgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagt |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
15015865 |
tccttgtagtagctgggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcaaagt |
15015964 |
T |
|
| Q |
219 |
ctcaatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||| |||||| | | | ||||| ||||||| ||||||||||||| |||||| | ||| |
|
|
| T |
15015965 |
ctcaatttctcatcacttccaaaaatccgtaccttagttttaagaaacaacttcctgtacggcattgttccacaccatattggagagatgtctagtctaa |
15016064 |
T |
|
| Q |
319 |
aaactcttgattt |
331 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15016065 |
aaactcttgattt |
15016077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 14465808 - 14466078
Alignment:
| Q |
22 |
caacaaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaa |
121 |
Q |
| |
|
||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||| || | | || | ||||||||||||||||||| || |
|
|
| T |
14465808 |
caacaaaaatcaaaagcagtgagacagatgctctgttgaagtggaaagcaagctttgacaaccaaagcaagacactactctcttcatggattggtaataa |
14465907 |
T |
|
| Q |
122 |
tccttgtag---ttgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagt |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||||| |||| |||| ||||||||||||||||||| ||||||||| |||||||| | |
|
|
| T |
14465908 |
tccttgtagtagttgggaaggaatcacatgtgatgatgaatcaaaatcaatctacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaact |
14466007 |
T |
|
| Q |
219 |
ctcaatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| |||||| |||| |
|
|
| T |
14466008 |
ctcaatttctcatcacttccaaaaatccaagaattagttttgagaaacaactccttctatggagttattcc |
14466078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 49 - 365
Target Start/End: Complemental strand, 14524848 - 14524532
Alignment:
| Q |
49 |
atgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaatccttgtagttgggaaggaatcacatg |
148 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| || | | | |||||||||||||||||||||| || ||||| | ||||| ||||||||||| |
|
|
| T |
14524848 |
atgctttattgaaatggaaagcaagctttgacaaccaaagcaagtctttgctctcttcatggattggtaataagccttgcaattgggtgggaatcacatg |
14524749 |
T |
|
| Q |
149 |
ttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccac |
248 |
Q |
| |
|
| || | |||||||| |||| |||| || |||| | | |||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
14524748 |
tgatggcaagtcaaaatctatctacaagatacatcttgcaagtattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccat |
14524649 |
T |
|
| Q |
249 |
atcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgtcaaatctggaaactcttgatttatcacttaatagactct |
348 |
Q |
| |
|
| ||||||||||| |||||| || ||||| ||||||||||| ||||||||||| | |||| ||||| || ||||||||||| ||||| |||| ||||| |
|
|
| T |
14524648 |
agcttagttttaagaaacaactcattctatggagttgttccacaccatattggtctaatgtgcaatctagacactcttgatttgtcactaaataaactct |
14524549 |
T |
|
| Q |
349 |
ctggtagcattcccaat |
365 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
14524548 |
ctggtagcattcacaat |
14524532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 336
Target Start/End: Original strand, 14480706 - 14481032
Alignment:
| Q |
25 |
caaaaatccaaggcagtgaagtagatgctctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctcttcatggattggtagcaatcc |
124 |
Q |
| |
|
|||||| |||||||| || | ||||||||| || ||||||||||||||||||||||| || || | || | | ||||||||||||||||||| ||||| |
|
|
| T |
14480706 |
caaaaaaccaaggcaacgaggcagatgctcttttaaagtggaaagcaagctttgacaaacaaagcaaggaaatactctcttcatggattggtaataatcc |
14480805 |
T |
|
| Q |
125 |
ttgtagt---------------tgggaaggaatcacatgttgtgatgactcaaaatccatctgcaagttaaatctcaccaatattggcttaaaaggtatg |
209 |
Q |
| |
|
||||||| ||||||||||||| |||| | || |||||||||| || |||| || ||||||||| | ||| ||||||||| |
|
|
| T |
14480806 |
ttgtagtagtattggactaagttgggaaggaatcatatgtgataataactcaaaatctattaacaagatagatctcaccagttttgaactaaaaggtaca |
14480905 |
T |
|
| Q |
210 |
cttcaaagtctcaatttctcatcacttccaaaaatccacatcttagttttaaaaaacaattccttctacggagttgttcctcaccatattggagtgatgt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| | |||||| |||||| |||| |||||||||| || |||| |
|
|
| T |
14480906 |
cttcaaagtctcaatttctcatcacttccaaaaatccaaaaattagttttgagaaacaacttcttctatggagttattccataccatattggtgtaatgt |
14481005 |
T |
|
| Q |
310 |
caaatctggaaactcttgatttatcac |
336 |
Q |
| |
|
| |||||| | ||||||||||| |||| |
|
|
| T |
14481006 |
ccaatctgaacactcttgatttttcac |
14481032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 15035929 - 15035984
Alignment:
| Q |
350 |
tggtagcattcccaatgaagttggtaagctcaattcccttaccacaatccaattgt |
405 |
Q |
| |
|
|||||||||||| |||||| | || |||||| |||||||| ||||||||||||||| |
|
|
| T |
15035929 |
tggtagcattccaaatgaattaggaaagctctattccctttccacaatccaattgt |
15035984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 16023086 - 16023155
Alignment:
| Q |
178 |
taaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatcca |
247 |
Q |
| |
|
|||||||||| ||||| || || ||||||| |||| ||||||| || ||||||||||||||||| ||||| |
|
|
| T |
16023086 |
taaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcca |
16023155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 16101178 - 16101247
Alignment:
| Q |
178 |
taaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatcca |
247 |
Q |
| |
|
|||||||||| ||||| || || ||||||| |||| ||||||| || ||||||||||||||||| ||||| |
|
|
| T |
16101178 |
taaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcca |
16101247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 16170856 - 16170925
Alignment:
| Q |
178 |
taaatctcaccaatattggcttaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatcca |
247 |
Q |
| |
|
|||||||||| ||||| || || ||||||| |||| ||||||| || ||||||||||||||||| ||||| |
|
|
| T |
16170856 |
taaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcca |
16170925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University