View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1777_high_15 (Length: 406)

Name: NF1777_high_15
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1777_high_15
NF1777_high_15
[»] chr8 (3 HSPs)
chr8 (15-396)||(35710714-35711099)
chr8 (15-197)||(35519990-35520172)
chr8 (261-388)||(35517429-35517556)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 35710714 - 35711099
Alignment:
Q  15 tcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatcagcttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35710714 tcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatcagcttc 35710813  T
Q  115 tctattataccatctataatgatcatcatcactcctcttctt---ctcctcctctttattggtttccttctctgtaagtcactctatatattatacatag 211  Q
    |||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35710814 tctattataccatctataatcatcatcatcactcctcttcttctcctcctcctctttattggtttccttctctgtaagtcactctatatattatacatag 35710913  T
Q  212 tgcttgcttatatgtatcattgtttatgtgtttatttactgtt-gatttattggtttccatatttagagagcaagcaagacgcggcaacctgggttgttt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35710914 tgcttgcttatatgtatcattgtttatgtgtttatttactgttagattgattggtttccatatttagagagcaagcaagacgcggcaacctgggttgttt 35711013  T
Q  311 cgtggaagctcatggttcagagcttttgggagcatcctcctacaaagatcctattactagttttcctctttttcataacttctctg 396  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35711014 catggaagctcatggttcagagcttttgggagcatcctcctacaaagatcctattactagttttcctctttttcataacttctctg 35711099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 35520172 - 35519990
Alignment:
Q  15 tcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatcagcttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35520172 tcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatcagcttc 35520073  T
Q  115 tctattataccatctataatgatcatcatcactcctcttcttctcctcctctttattggtttccttctctgtaagtcactcta 197  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35520072 tctactataccatctataatgatcatcatcactcctcttcttctcctcctctttattggtttccttctctgtaagtcactcta 35519990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 261 - 388
Target Start/End: Complemental strand, 35517556 - 35517429
Alignment:
Q  261 ttggtttccatatttagagagcaagcaagacgcggcaacctgggttgtttcgtggaagctcatggttcagagcttttgggagcatcctcctacaaagatc 360  Q
    |||||||| | |||||||||||| ||||  |||  |||||||||| || || ||||| ||||||||||  ||||||| ||||||||||| ||||| ||||    
T  35517556 ttggtttctacatttagagagcaggcaatccgcaccaacctgggtcgtctcatggaaactcatggttctcagcttttaggagcatcctcgtacaaggatc 35517457  T
Q  361 ctattactagttttcctctttttcataa 388  Q
    ||||||||||||||||||||||||||||    
T  35517456 ctattactagttttcctctttttcataa 35517429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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