View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_high_19 (Length: 355)
Name: NF1777_high_19
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 41965421 - 41965198
Alignment:
| Q |
19 |
gttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttattttaatttgcttttatccttcaaaatcaaattctct |
118 |
Q |
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| T |
41965421 |
gttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttattttaatttgcttttatccttcaaaatcaaattctct |
41965322 |
T |
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| Q |
119 |
atatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcaatcaagaaaaggacgtcaaggtaacaacaaa |
218 |
Q |
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| T |
41965321 |
atatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcagtcaagaaaaggacgtcaaggtaacaacaaa |
41965222 |
T |
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| Q |
219 |
ttaacttcaaaccacttaatgttt |
242 |
Q |
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| T |
41965221 |
ttaacttcaaaccacttaatgttt |
41965198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 41965113 - 41965072
Alignment:
| Q |
309 |
actaacacatttccatttttcttcatcttgccctatgcttct |
350 |
Q |
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| T |
41965113 |
actaacacatttccatttttcttcatcttgccctatgcttct |
41965072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 24563213 - 24563122
Alignment:
| Q |
120 |
tatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcaatcaagaaaaggacgtcaaggtaa |
211 |
Q |
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| T |
24563213 |
tatagacatagatggactggaaggtatgaagctcacctttgggataacagctgtagaagggaaggtcagtcgagaaaaggccgccaaggtaa |
24563122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 30620032 - 30619980
Alignment:
| Q |
126 |
catagatggaccggaaggtatgaagctcacctttgggataatacttgtagaag |
178 |
Q |
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| T |
30620032 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
30619980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 16869959 - 16869910
Alignment:
| Q |
122 |
tagacatagatggaccggaaggtatgaagctcacctttgggataatactt |
171 |
Q |
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| T |
16869959 |
tagacatagatggaccggaaggtttgaagctcatctatgggataagactt |
16869910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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