View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_high_21 (Length: 341)
Name: NF1777_high_21
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 34097687 - 34097868
Alignment:
| Q |
1 |
gaacaagaatcattgcaacaatctgaaaaaagaaatcgaggagtgtcgtaagaagttaaacccgctatcatcatgatcagggtgcaatacatgacgccac |
100 |
Q |
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| T |
34097687 |
gaacaagaatcattgcaacaatctgaaaaaagaaatcgaggagtgtcgtaagaagttaaacccgctatca---tgatcagggtgcaatacatgacgccac |
34097783 |
T |
|
| Q |
101 |
cttatttgatttcttgaggaagtgcatgactcgcttaattatgcaagatgttttacatgggagacaacgtgcaaaaatcattggt |
185 |
Q |
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| T |
34097784 |
cttatttgatttcttgaggaagtgcatgactcgcttaattatgcaagatgttttatatgggagacaacgtgcaaaaatcattggt |
34097868 |
T |
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