View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_high_23 (Length: 335)
Name: NF1777_high_23
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 144 - 321
Target Start/End: Original strand, 30438506 - 30438688
Alignment:
| Q |
144 |
aactttgccacaagttcaacaacctagtataaatacaatttaggtaaaacctacatcccaaaacgaatacagtt-----cacctcatgtaagagaaattt |
238 |
Q |
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| T |
30438506 |
aactttgccacaagttccacaaccgagcataaatacaatttaggtaaaacctacatcccaaaacgaatacagtttatgccacctcaggtaagagaaattt |
30438605 |
T |
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| Q |
239 |
tccacaagttctacaaccgagcataaataaaattaaggttaaacctgacggatacagtttatgctttctcgatgaagagaact |
321 |
Q |
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| T |
30438606 |
tccacaagttctacaaccgagtataaataaaattaaggttaaacctgacggatacagtttatgctttctcgatgaagagaact |
30438688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 30438469 - 30438535
Alignment:
| Q |
15 |
gagcataaattaggtaatacgccatctcggataagagaactttgccacaagttccacaaccgagcat |
81 |
Q |
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| T |
30438469 |
gagcataaattaggtaatacgccatctcggataaaagaactttgccacaagttccacaaccgagcat |
30438535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 30438504 - 30438557
Alignment:
| Q |
231 |
agaaattttccacaagttctacaaccgagcataaataaaattaaggttaaacct |
284 |
Q |
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| T |
30438504 |
agaactttgccacaagttccacaaccgagcataaatacaatttaggtaaaacct |
30438557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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