View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1777_high_25 (Length: 312)
Name: NF1777_high_25
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 41062815 - 41063092
Alignment:
| Q |
18 |
acaattggtgaaataaattccaccaggatgaatacaacaaataataagctcataattttcatgactcagttttttctgcaagttgtttgatttctcttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062815 |
acaattggtgaaataaattccaccaggatgaatacaacaaataataagctcataattttcatgactcagttttttctgcaagttgtttgatttctcttct |
41062914 |
T |
|
| Q |
118 |
cctatataggttggttttatcatgcaaatgttattaaggattttgataattacaacaagaaagtgttattttggtgagaacatgcaaatgtggttcttta |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41062915 |
cctggataggttggttttatcatgcaaatgttattaaggattttgataattacaacaagaaggtgttattttcgtgagaacatgcaaatgtggttcttta |
41063014 |
T |
|
| Q |
218 |
ccaactatgcc--cacacttcacgaatgattaataaactaacaccaacttgaggtaattcattcctactagcttaaaa |
293 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41063015 |
ccaactatgcctacacacttcacgaatgattaataaactaacaccaacttgaggtaattcattcctactagcttaaaa |
41063092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University