View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1777_high_34 (Length: 246)
Name: NF1777_high_34
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_34 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 37579483 - 37579307
Alignment:
| Q |
70 |
gtattactttttaatttcttccttttaatatatttcatatactctgtaattttcccaatgttaatgaatcatgcatgtttgtagattccaggtccccttc |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37579483 |
gtattactttttaatttcttccttttaatatatttcatatactctgtaaatttcccaattttaacgaatcatgcatgtttgtagattccaggtccccttc |
37579384 |
T |
|
| Q |
170 |
ctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcagatgctaccgtt |
246 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
37579383 |
ctaaaggagaaataatagaacgccagaagaaaattggtctttggggaataacactaccttcagcagatgcaaccgtt |
37579307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 27218559 - 27218391
Alignment:
| Q |
79 |
tttaatttcttccttttaatatatttcatatactctgtaattttcccaatgtt-aatgaatcatgcatgtttgtagattccaggtccccttcctaaagga |
177 |
Q |
| |
|
|||| ||| ||| ||||||||||||| |||| ||| |||||||| ||| || || |||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
27218559 |
tttacttttttctttttaatatattttatatcctccgtaattttgtgaatttttaaataatcatacatgtttgtagattccaggtccccttcctaaagaa |
27218460 |
T |
|
| Q |
178 |
gaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcagatgctaccgtt |
246 |
Q |
| |
|
||||| |||||||| || |||||||||| |||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
27218459 |
caaatattagaacacaagaagaaaattggcctttggggaataacactaccttcagcaaatgcaaccgtt |
27218391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 27211525 - 27211422
Alignment:
| Q |
136 |
aatcatgcatgtttgtagattccaggtccccttcctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcag |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
27211525 |
aatcatacatgtttgtagattccaggtccccttcctaaagaacaaataatagaacaagagaagaaaattggcctttggagaataacactaccttcagcag |
27211426 |
T |
|
| Q |
236 |
atgc |
239 |
Q |
| |
|
|||| |
|
|
| T |
27211425 |
atgc |
27211422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 34262014 - 34262063
Alignment:
| Q |
65 |
accttgtattactttttaatttcttccttttaatatatttcatatactct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34262014 |
accttgtattactttttaatttcttccttttaatatatttcatatactct |
34262063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 34261918 - 34261964
Alignment:
| Q |
16 |
cataaaacagtatttcacattgtcagtgaacaaactgctagtttctg |
62 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34261918 |
cataaaacaggatttcacattgtcagtgaacaaactgctactttctg |
34261964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University