View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_high_5 (Length: 524)
Name: NF1777_high_5
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Complemental strand, 38666553 - 38666050
Alignment:
| Q |
20 |
gtgagagcgttgctgaagaagataaagcgtagggttatggttggagataaggttttagtaggttctgttgattgggttgatcgtagggctatgattgaga |
119 |
Q |
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| T |
38666553 |
gtgagagcgttgctgaagaagataaagcgtagggttatggttggagataaggttttagtaggttctgttgattgggttgatcgtagggctatgattgaga |
38666454 |
T |
|
| Q |
120 |
atgtgtttcagagaaattctgaaatgcttgatcctcctgtggctaatgtggatcatttgcttgttctgttttcgcttgatcagcctaagcttgagccttt |
219 |
Q |
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| T |
38666453 |
atgtgtttcagagaaattctgaaatgcttgatcctcctgtggctaatgtggatcatttgcttgttctgttttcgcttgatcagcctaagcttgagccttt |
38666354 |
T |
|
| Q |
220 |
tacgctaacacggtttttggttgaagctgagtctactgggattcctctcactcttgctcttaacaagactgagcttgtcgataaagaggtttgttatgtt |
319 |
Q |
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| T |
38666353 |
tacgctaacacggtttttggttgaagctgagtctactgggattcctctcactcttgctcttaacaagactgagcttgtcgataaagaggtttgttatgtt |
38666254 |
T |
|
| Q |
320 |
gccataatgacgttgtgattatgattatgtgttcatttag--------tgtatactaaggttagatgaaaattgtggtaggttagattagaccaatgttg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666253 |
gccataatgacgttgtgattatgattatgtgttcatttagtgtagaagtgtatactaaggttagatgaaaattgtggtaggttagattagaccaatgttg |
38666154 |
T |
|
| Q |
412 |
gatgtgcttatatctaataagagttaaggccaatttggataacctgttgaattaagcacatgtaacataagggtgcattttattggcaaaacaacaagta |
511 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38666153 |
gatgtgcttatagctaataagagttaaggccaatttggataaccggttgaattaagcatatgtaacataagggtgcattttattcgcaaaacaacaagta |
38666054 |
T |
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| Q |
512 |
ttat |
515 |
Q |
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| T |
38666053 |
ttat |
38666050 |
T |
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