View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1777_high_6 (Length: 523)
Name: NF1777_high_6
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 506
Target Start/End: Complemental strand, 43325725 - 43325228
Alignment:
| Q |
9 |
gattattctgatacagaaggctactatgtgtctttttcgatgtgaaaagaaggcactaaaattatgattctagttataaaacttggtatgattatcctgt |
108 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43325725 |
gattatcctaatacagaaggctactatgtgtctttttcgatgtgaaaagaaggcactaaaattatgattctagttataaaacttggtatgattatcctgt |
43325626 |
T |
|
| Q |
109 |
tacagaaggctattatgtgtctttttcggtgtgaataaggcactaatttctaattctagttatgtgtggttttagtaatgtctaatgtggtgttttattt |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43325625 |
tacagaaggctattaagtgtctttttcggtgtgaataaggcactaatttctaattctagttatgtgtggttttagtaatgtctaatgtggtgttttattt |
43325526 |
T |
|
| Q |
209 |
atgtatttctgactttggggagcaatgtatcatataactatgatctgtggatctttgttggaaaaataaaagcactggtttgtattttcactatttctct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43325525 |
atgtatttctgactttggggagcaatgtatcatataactatgatctgtagatctttgttggaaaaataaaagcactggtttgtattttcactatttctct |
43325426 |
T |
|
| Q |
309 |
tctttggcaatgtcaaaattttattatcttttgcatttggaaattggcaagtacagcaaatagttgtaaccgttttgattggcactatgttattggttga |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43325425 |
tctttggcaatgtcaaaattttattgtcttttgcatttggaaattggcaagtacagcaaatagttgtaaccgttttgattggcactatgttattggttga |
43325326 |
T |
|
| Q |
409 |
aaaatgtaagatataaaaataaaaactagtttggggttgttcatggcccttttgagaaggggttattcatggaagccagatgctcatggtaacaaact |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43325325 |
aaaatgtaagctataaaaataaaaactagtttggggttgttcatggcccttttgagaaggggttattcatggaagccagatgctcatggtaacaaact |
43325228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 43325734 - 43325680
Alignment:
| Q |
89 |
acttggtatgattatcctgttacagaaggctattatgtgtctttttcggtgtgaa |
143 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
43325734 |
acttggtacgattatcctaatacagaaggctactatgtgtctttttcgatgtgaa |
43325680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University