View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_12 (Length: 457)
Name: NF1777_low_12
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 255 - 447
Target Start/End: Original strand, 50528452 - 50528644
Alignment:
| Q |
255 |
tttgcaatcgcagtgatttttacaaaattacaatggcaccctaattttgttgaagctataaattatagtttttgctaactataagatacacactcaatcg |
354 |
Q |
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| T |
50528452 |
tttgcattcgcagtgatttttacaaaattacactggcaccctaattttgttgaagctataaattatagtttttgctaactataagatacacactcaatcg |
50528551 |
T |
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| Q |
355 |
gcttcataatgaaggtgacaatgtggagagctacactgaacccattcacactaatgaggaaacataaaatcttatcacaatccagcagaataa |
447 |
Q |
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| T |
50528552 |
gcttcataatgaaggtgacaatgtggagagctacactgaacccattcacactaatgaggaaacataaaatcttatcacaatccagcagaataa |
50528644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 50528175 - 50528410
Alignment:
| Q |
20 |
ttacccagtttcacttccaataaaaataattatatactaaggcaactacagttttcacaatcatccatgtgaaaagtggtatatttaactgctaaaactt |
119 |
Q |
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| T |
50528175 |
ttacccagtttcacttccaataaaaataattctatactaaggcaactacagttttcacaatcatccatgtgaaaagtggtatatttaactgctaaaactt |
50528274 |
T |
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| Q |
120 |
aaaagcacttctcttttggccacnnnnnnnngataaatgttaaagccaca----atctacctatatagtggttgagcctaaagaaagggattagccaata |
215 |
Q |
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| T |
50528275 |
aaaagcacttctcttttggccac-tttttttgataaatgttaaagccacaatctatctacctatatagtggttgagcctaaagaaagggattagcc---a |
50528370 |
T |
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| Q |
216 |
atactaaatctctatcaaaagaggtaccacatttggtgct |
255 |
Q |
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| T |
50528371 |
atactaaatctctatcaaaagaggtaccacatttggtgct |
50528410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 328
Target Start/End: Complemental strand, 45608406 - 45608376
Alignment:
| Q |
298 |
attttgttgaagctataaattatagtttttg |
328 |
Q |
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| T |
45608406 |
attttgttgaagctataaattatagtttttg |
45608376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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