View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_16 (Length: 390)
Name: NF1777_low_16
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 267 - 382
Target Start/End: Original strand, 15601323 - 15601438
Alignment:
| Q |
267 |
agagatcgagaaaactatggtttacgaaagaaatttgtgtttatgagactctgttttgatgaatgaacgaataaacggagaaaaatcttttgtatttgta |
366 |
Q |
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| T |
15601323 |
agagatcgagaaaactatggcttacgaaagaaatttgtgtttatgagactctgttttgatgaatgaacgaataaaaggagaaaaatcttttgtatttgta |
15601422 |
T |
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| Q |
367 |
ggtgaaggttcttctc |
382 |
Q |
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| T |
15601423 |
ggtgaaggttcttctc |
15601438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 15601194 - 15601259
Alignment:
| Q |
138 |
cgaatgtagggttttgtaaccgctaacaaattcacagaagaagaaaattaccgagaaaacgaatga |
203 |
Q |
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| T |
15601194 |
cgaatgtagggttttgtaaccgctaacaaattcacggaagaagaaaattaccgagaaaacgaatga |
15601259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 15601072 - 15601128
Alignment:
| Q |
16 |
acattcaccaggactatcaatactcatacttcacaattctccacaattcaccagctc |
72 |
Q |
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| T |
15601072 |
acattcaccaggactatcaatactcatacttcacaattctccacaattcaccagctc |
15601128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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