View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_17 (Length: 382)
Name: NF1777_low_17
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 377
Target Start/End: Complemental strand, 34097485 - 34097114
Alignment:
| Q |
2 |
taagagcatagtctctaatctcttctaaaaaacacaaggagtg-gttgcctggactttgaaaccaggtaaaatggtagccttccttccatttggacatat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097485 |
taagagcatagtct--aatctcttctaaaaaacacaaggagaatgttgcctggactttgaaaccaggtaaaatggtagccttccttccatttggacatat |
34097388 |
T |
|
| Q |
101 |
aactacaacccataatctaataccgcctgtcttaattcgttaataaaccaattaggcctcttaattcttccttttttcctcatgagcatccaatatatca |
200 |
Q |
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||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097387 |
aac---aacccataatctaatatcgcatgtcttaattcgttaataaaccaattaggcctcttaattcttccttttttcctcatgagcatccaatatatca |
34097291 |
T |
|
| Q |
201 |
ttaaaatccctaatgatgcaccacgaaatagaaatattttgcgaaaaatcacaaataaagttccatgaatcccgctttcaactttcactaggataaccgt |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097290 |
ttaaaatccctaatgatgcaccacgaaatataaatattttgcgagaaatcacaaataaagttccatgaatcccgctttcaactttcactaggataaccgt |
34097191 |
T |
|
| Q |
301 |
agtaccctatgaaatgataaatacctctacgagcatcaccaacatcagtatttgatgtgattagaagaataatctac |
377 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097190 |
agtaccctatgaaacgataaacacctctacgagcatcaccaacatcagtatttgatgtgattagaagaataatctac |
34097114 |
T |
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