View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_18 (Length: 365)
Name: NF1777_low_18
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_18 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 4217 - 3939
Alignment:
| Q |
18 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4217 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagt |
4118 |
T |
|
| Q |
118 |
gactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4117 |
gactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccat |
4018 |
T |
|
| Q |
218 |
tggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4017 |
tggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 11873 - 11595
Alignment:
| Q |
18 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagt |
11774 |
T |
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| Q |
118 |
gactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcat |
217 |
Q |
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| T |
11773 |
gactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccat |
11674 |
T |
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| Q |
218 |
tggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11673 |
tggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
11595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 6510193 - 6509915
Alignment:
| Q |
18 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510193 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagt |
6510094 |
T |
|
| Q |
118 |
gactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6510093 |
gactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccat |
6509994 |
T |
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| Q |
218 |
tggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
296 |
Q |
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|
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| T |
6509993 |
tggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
6509915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 6497207 - 6497114
Alignment:
| Q |
18 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggat |
111 |
Q |
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|
|||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497207 |
agctagcaggccaagcatggctactgtagtagtgatgctaaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggat |
6497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 6514557 - 6514468
Alignment:
| Q |
18 |
agctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatat |
107 |
Q |
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||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||| |
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| T |
6514557 |
agctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat |
6514468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 6502529 - 6502468
Alignment:
| Q |
28 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgccttt |
89 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
6502529 |
ccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 6525950 - 6526011
Alignment:
| Q |
17 |
cagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctc |
78 |
Q |
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||||||||||||||| ||||||||| ||||| | |||||||||||| ||||| | |||||| |
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| T |
6525950 |
cagctagcaggccaactatggcttctattgtactaatgcttaatagtcattctctcactctc |
6526011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 27367975 - 27367905
Alignment:
| Q |
28 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgc |
98 |
Q |
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|||| |||||||||||||| ||| |||||||||||| ||||| || ||||| |||| |||| | ||||||| |
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| T |
27367975 |
ccaaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgc |
27367905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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