View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_2 (Length: 583)
Name: NF1777_low_2
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 152 - 394
Target Start/End: Complemental strand, 56295960 - 56295719
Alignment:
| Q |
152 |
atgtacacgtagacccacttaggaactcattttaaaaattcaccatttttaatattctaagtatatctctgcattccttaaaccaaata-tattttgtat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||| |
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| T |
56295960 |
atgtacacgtagacccacttaggaactcattttaaaaattcaccattttttatattctaagtatatctctgcattccttaaa--atatagtattttgtat |
56295863 |
T |
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| Q |
251 |
caaaccatcaaattactactaataaatgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaattagtaacaggaacatgaaga |
350 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
56295862 |
caaaccatcaaaccactactaataaatgaatttgggataaactatgaaattcaatgaataaaattctgcattcttttaattagtgacaggaacatgaaga |
56295763 |
T |
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| Q |
351 |
aagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
394 |
Q |
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| T |
56295762 |
aagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
56295719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 423 - 567
Target Start/End: Complemental strand, 56295690 - 56295546
Alignment:
| Q |
423 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgtttcaannn |
522 |
Q |
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| T |
56295690 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgtttcagttt |
56295591 |
T |
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| Q |
523 |
nnnnnnnacggcttctatgattcataattaatttactgttaaaag |
567 |
Q |
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| T |
56295590 |
tttttttacggcttctatgattcataattaatttactgttaaaag |
56295546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 56296088 - 56296011
Alignment:
| Q |
24 |
ataattatagctaaagtcattggtagaaaacatatacattactgttgaaatataatgatgtgttggttttgagagtgt |
101 |
Q |
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| T |
56296088 |
ataattatagctaaagtcattggtagaaaaaatatacattactgttgaaatataatgatgtgttggttttgagagtgt |
56296011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 241 - 394
Target Start/End: Complemental strand, 36229088 - 36228935
Alignment:
| Q |
241 |
tattttgtatcaaaccatcaaattactactaataaatgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaattagtaacagg |
340 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
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| T |
36229088 |
tattttgtatcaaaccatcaaactactactaataaatgaatttgggataaactatgaaattcaatgaataaaattatgcattcttttaattagtgacagg |
36228989 |
T |
|
| Q |
341 |
aacatgaagaaagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36228988 |
aacatgaagaaagtgcagcagaaatgaaatccatgaagatttaaaaaagattag |
36228935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 423 - 516
Target Start/End: Complemental strand, 36228906 - 36228813
Alignment:
| Q |
423 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgttt |
516 |
Q |
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| T |
36228906 |
ataaactgaaagtggattaccgaatcatcattacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgttt |
36228813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 32318909 - 32318820
Alignment:
| Q |
241 |
tattttgtatcaaaccatcaaattactactaataaa-tgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaa |
329 |
Q |
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|||||||||||||| ||| ||| ||||||||| ||| |||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
32318909 |
tattttgtatcaaagcataaaactactactaaaaaaatgaatttgagataaactatgaaatttgatgaataaaattctgcattcttttaa |
32318820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 241 - 394
Target Start/End: Original strand, 17917393 - 17917546
Alignment:
| Q |
241 |
tattttgtatcaaaccatcaaattactactaataaatgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaattagtaacagg |
340 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
17917393 |
tattttgtatcaaaccatcaaactactactaataaatgaatttgggataaactatgaaattcaatgaataaaattctgcattcttttaattagtgacagg |
17917492 |
T |
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| Q |
341 |
aacatgaagaaagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
394 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
17917493 |
aacatgtagaaagtgcagcataaatgaaatccatgaagatttaaaaaagattag |
17917546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 17917575 - 17917633
Alignment:
| Q |
423 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaa |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17917575 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaa |
17917633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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